Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 2.3e-51 205.3 107 100.0
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.4e-43 178.7 107 87.9
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 3.0e-38 161.8 108 81.5
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.2e-34 149.8 107 75.7
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 2.6e-34 148.7 107 74.8
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.3e-33 146.4 107 73.8
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 4.6e-31 137.9 107 67.3
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 7.8e-31 137.1 107 66.4
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.1e-29 133.3 108 66.7
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.1e-29 133.3 108 68.5
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 7.3e-29 130.6 108 63.9
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.6e-28 129.4 106 66.0
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 3.6e-28 128.3 110 64.5
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 2.4e-27 125.6 105 64.8
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.5e-26 122.9 107 64.5
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.5e-26 122.9 110 62.7
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 7.6e-26 120.6 106 63.2
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.1e-24 116.7 94 66.0
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 7.1e-24 114.0 108 59.3
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.2e-23 113.2 108 62.0
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 4.6e-23 111.3 108 63.9
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.3e-22 109.0 108 59.3
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 3.0e-22 108.6 108 57.4
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 3.0e-22 108.6 109 55.0
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 3.0e-22 108.6 109 59.6
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 5.1e-22 107.8 110 58.2
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 5.1e-22 107.8 108 58.3
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 5.1e-22 107.8 116 55.2
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 6.7e-22 107.5 106 59.4
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 8.7e-22 107.1 108 57.4
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.7e-22 107.1 108 56.5
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.1e-21 106.7 105 59.0
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.5e-21 106.3 108 56.5
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 3.3e-21 105.1 107 59.8
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 4.3e-21 104.8 111 56.8
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.6e-21 104.4 108 56.5
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 9.6e-21 103.6 112 55.4
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.6e-20 102.8 115 59.1
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 3.7e-20 101.7 111 55.9
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 4.8e-20 101.3 108 52.8
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 8.1e-20 100.5 109 57.8
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.1e-19 100.1 108 59.3
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.8e-19 99.4 105 57.1
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 4.0e-19 98.2 109 56.0
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 5.3e-19 97.8 113 54.0
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 6.9e-19 97.4 108 53.7
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 9.0e-19 97.1 104 58.7
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 9.0e-19 97.1 106 52.8
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 9.0e-19 97.1 87 63.2
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.5e-18 96.3 105 58.1
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.5e-18 96.3 105 58.1
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.6e-18 95.5 109 54.1
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 3.4e-18 95.1 110 53.6
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.5e-18 94.7 110 54.5
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.5e-18 94.7 110 54.5
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 4.5e-18 94.7 109 51.4
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 4.5e-18 94.7 107 53.3
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 9.9e-18 93.6 108 52.8
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 1.7e-17 92.8 107 55.1
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 2.2e-17 92.4 109 51.4
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 2.2e-17 92.4 112 56.2
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 4.9e-17 91.3 106 56.6
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 6.4e-17 90.9 110 55.5
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 6.4e-17 90.9 107 48.6
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 6.4e-17 90.9 108 50.9
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 1.4e-16 89.7 99 55.6
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 4.2e-16 88.2 93 60.2
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 7.1e-16 87.4 110 51.8
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 9.3e-16 87.0 105 53.3
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.2e-15 86.7 112 50.0
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.2e-15 86.7 113 47.8
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.2e-15 86.7 113 47.8
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.6e-15 86.3 107 53.3
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.6e-15 86.3 108 50.9
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 2.1e-15 85.9 108 51.9
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 2.1e-15 85.9 109 50.5
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 4.6e-15 84.7 103 48.5
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 4.6e-15 84.7 112 48.2
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 4.6e-15 84.7 104 50.0
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 6.0e-15 84.3 108 47.2
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.0e-15 84.3 108 47.2
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 7.9e-15 84.0 91 51.6
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.0e-14 83.6 112 49.1
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 3.9e-14 81.6 113 50.4
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 5.1e-14 81.3 114 47.4
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.1e-14 81.3 106 48.1
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 6.7e-14 80.9 109 49.5
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.7e-14 80.9 108 46.3
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.7e-14 80.9 105 46.7
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 6.7e-14 80.9 109 47.7
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 6.7e-14 80.9 110 49.1
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.1e-13 80.1 108 48.1
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.5e-13 79.7 114 48.2
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.9e-13 79.3 109 49.5
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.9e-13 79.3 106 47.2
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.9e-13 79.3 97 50.5
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 4.3e-13 78.2 109 46.8
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 7.4e-13 77.4 62 69.4
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 7.4e-13 77.4 108 48.1
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 9.6e-13 77.0 109 47.7
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 9.6e-13 77.0 109 47.7
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 9.6e-13 77.0 109 47.7
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 9.6e-13 77.0 110 44.5
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.3e-12 76.6 108 46.3
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.3e-12 76.6 111 45.0
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.6e-12 76.3 112 51.8
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-12 75.9 106 46.2
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 2.8e-12 75.5 110 50.9
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 3.7e-12 75.1 106 48.1
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 4.8e-12 74.7 107 49.5
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 4.8e-12 74.7 106 44.3
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.8e-12 74.7 111 47.7
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 6.2e-12 74.3 110 47.3
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 6.2e-12 74.3 115 47.0
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 8.2e-12 73.9 106 50.0
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 8.2e-12 73.9 106 50.0
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 8.2e-12 73.9 106 50.0
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 8.2e-12 73.9 106 47.2
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.1e-11 73.6 92 50.0
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.8e-11 72.8 110 45.5
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.8e-11 72.8 108 44.4
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.8e-11 72.8 113 46.0
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.4e-11 72.4 107 44.9
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 3.1e-11 72.0 111 45.0
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 4.0e-11 71.6 106 46.2
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 5.3e-11 71.2 106 46.2
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 5.3e-11 71.2 108 42.6
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 9.0e-11 70.5 108 43.5
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.2e-10 70.1 109 45.0
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.2e-10 70.1 110 42.7
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.2e-10 70.1 106 47.2
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 2.0e-10 69.3 120 43.3
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 3.4e-10 68.6 96 47.9
Prupe.2G015200 Prunus persica HOM05D004268 ORTHO05D004958 5.8e-10 67.8 120 39.2
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 1.0e-09 67.0 115 47.0
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 1.7e-09 66.2 113 42.5
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 1.7e-09 66.2 118 41.5
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 2.2e-09 65.9 106 46.2
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 2.2e-09 65.9 121 41.3
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.2e-09 65.9 119 45.4
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.9e-09 65.5 37 75.7
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.9e-09 65.5 83 51.8
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 3.8e-09 65.1 106 40.6
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 3.8e-09 65.1 106 40.6
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 3.8e-09 65.1 112 42.9
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 8.4e-09 63.9 108 42.6
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 1.9e-08 62.8 39 74.4
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 4.2e-08 61.6 116 41.4
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.6e-07 59.7 113 46.0
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 2.1e-07 59.3 110 45.5
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 2.1e-07 59.3 120 40.0
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 3.5e-07 58.5 38 76.3
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 7.9e-07 57.4 38 73.7
Mapoly0111s0017 Marchantia polymorpha HOM05D024154 ORTHO05D023530 1.0e-06 57.0 117 35.9
AagrBONN_evm.TU.Sc2ySwM_344.1747 Anthoceros agrestis HOM05D024154 ORTHO05D023530 2.3e-06 55.8 107 37.4
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.3e-06 55.8 108 39.8
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 3.9e-06 55.1 109 36.7


User provided reference genes

Program Settings