Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 8.5e-51 203.4 102 100.0
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 5.9e-44 180.6 102 87.3
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 1.0e-43 179.9 102 86.3
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 9.4e-42 173.3 103 85.4
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 2.6e-39 165.2 102 79.4
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.4e-39 164.5 102 79.4
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.3e-38 162.9 102 78.4
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 6.3e-30 134.0 102 69.6
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 1.6e-28 129.4 87 74.7
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 4.5e-28 127.9 97 63.9
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 2.9e-27 125.2 102 65.7
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 1.5e-26 122.9 101 60.4
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 3.3e-26 121.7 94 66.0
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 1.6e-25 119.4 100 59.0
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 2.1e-25 119.0 102 59.8
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 2.1e-25 119.0 98 63.3
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 1.0e-24 116.7 88 62.5
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 5.2e-24 114.4 89 61.8
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.2e-23 113.2 89 61.8
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 3.4e-23 111.7 82 64.6
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 4.4e-23 111.3 99 57.6
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 4.4e-23 111.3 80 66.2
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 7.5e-23 110.5 101 58.4
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.8e-22 108.6 81 60.5
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 3.7e-22 108.2 97 58.8
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.1e-21 106.7 95 53.7
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 1.4e-21 106.3 95 53.7
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-21 106.3 106 57.5
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.4e-21 106.3 106 57.5
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.8e-21 105.9 85 63.5
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.1e-21 104.8 106 56.6
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.1e-21 104.8 106 56.6
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 5.4e-21 104.4 85 56.5
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 5.4e-21 104.4 85 56.5
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 5.4e-21 104.4 97 53.6
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 5.4e-21 104.4 89 59.6
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 5.4e-21 104.4 97 53.6
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 7.0e-21 104.0 81 65.4
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 9.2e-21 103.6 100 50.0
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 2.0e-20 102.4 106 54.7
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.0e-20 102.4 106 54.7
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.0e-20 102.4 106 54.7
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 2.0e-20 102.4 79 64.6
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 2.0e-20 102.4 83 61.4
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 2.0e-20 102.4 97 50.5
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 4.5e-20 101.3 81 59.3
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 4.5e-20 101.3 84 58.3
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 4.5e-20 101.3 92 53.3
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 5.9e-20 100.9 101 47.5
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 7.8e-20 100.5 81 58.0
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 1.0e-19 100.1 84 60.7
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 1.7e-19 99.4 104 46.2
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 1.7e-19 99.4 96 49.0
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.7e-19 99.4 88 52.3
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 2.3e-19 99.0 83 57.8
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 3.8e-19 98.2 100 47.0
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 3.8e-19 98.2 88 52.3
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 3.8e-19 98.2 96 57.3
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 3.8e-19 98.2 101 53.5
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 5.0e-19 97.8 83 57.8
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 6.6e-19 97.4 79 62.0
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 1.1e-18 96.7 111 50.5
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 1.9e-18 95.9 76 67.1
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.9e-18 95.9 83 57.8
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 2.5e-18 95.5 78 60.3
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 2.5e-18 95.5 73 67.1
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 3.3e-18 95.1 78 62.8
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 4.3e-18 94.7 99 51.5
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 5.6e-18 94.4 76 57.9
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 5.6e-18 94.4 83 54.2
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 7.3e-18 94.0 74 60.8
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 7.3e-18 94.0 70 65.7
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 2.1e-17 92.4 78 64.1
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 2.1e-17 92.4 74 60.8
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 2.1e-17 92.4 76 65.8
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 2.8e-17 92.0 78 64.1
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 4.7e-17 91.3 122 41.8
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 4.7e-17 91.3 80 56.2
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 6.1e-17 90.9 79 58.2
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 6.1e-17 90.9 74 58.1
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 8.0e-17 90.5 77 54.5
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 1.0e-16 90.1 74 56.8
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 1.4e-16 89.7 68 63.2
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 4.0e-16 88.2 65 63.1
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 4.0e-16 88.2 65 63.1
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 8.9e-16 87.0 77 55.8
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 8.9e-16 87.0 74 58.1
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 1.2e-15 86.7 94 48.9
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 1.5e-15 86.3 78 61.5
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.6e-15 85.5 68 57.4
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 2.2e-14 82.4 76 57.9
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 6.4e-14 80.9 79 57.0
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 6.4e-14 80.9 53 81.1
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 6.4e-14 80.9 71 56.3
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.1e-13 80.1 77 55.8
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 1.4e-13 79.7 59 62.7
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 4.1e-13 78.2 81 49.4
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 4.1e-13 78.2 81 49.4
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 7.0e-13 77.4 78 53.8
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.2e-12 76.6 77 54.5
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 1.6e-12 76.3 76 51.3
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 1.6e-12 76.3 62 54.8
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 1.3e-11 73.2 96 43.8
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 1.7e-11 72.8 56 66.1
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 5.0e-11 71.2 71 54.9
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 8.6e-11 70.5 98 41.8
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 2.1e-09 65.9 54 61.1
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 6.2e-09 64.3 97 38.1
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 1.5e-07 59.7 72 51.4
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 1.5e-07 59.7 72 51.4
COL.COLO4_24647 Corchorus olitorius HOM05D006948 ORTHO05D008703 2.6e-07 58.9 41 78.0
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 2.6e-07 58.9 47 66.0
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 4.4e-07 58.2 60 46.7
ATR0767G212 Amborella trichopoda HOM05D006948 ORTHO05D008703 2.2e-06 55.8 63 52.4


User provided reference genes

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