Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 8.6e-99 364.0 233 100.0
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 9.6e-74 280.8 231 67.5
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 2.5e-66 256.1 234 65.8
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 2.5e-66 256.1 234 65.4
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.6e-65 253.4 233 64.4
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 9.0e-56 221.1 233 57.9
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 4.6e-52 208.8 236 55.5
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 1.8e-51 206.8 238 57.1
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 3.3e-50 202.6 182 71.4
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 2.8e-49 199.5 237 52.3
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 3.7e-49 199.1 242 52.5
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 2.2e-46 189.9 235 53.6
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 4.9e-46 188.7 241 49.4
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 1.6e-44 183.7 232 51.7
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 1.0e-43 181.0 237 46.4
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 5.1e-43 178.7 236 47.0
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 7.4e-42 174.9 236 51.3
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 9.7e-42 174.5 237 48.9
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 3.7e-41 172.6 237 55.3
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 3.7e-41 172.6 234 48.7
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 1.5e-39 167.2 233 47.2
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 3.4e-39 166.0 232 46.6
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 4.5e-39 165.6 232 50.9
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 1.0e-38 164.5 234 47.4
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 1.3e-38 164.1 231 43.7
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 1.7e-38 163.7 233 48.5
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 5.0e-38 162.2 235 46.8
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 2.5e-37 159.8 232 51.3
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 2.5e-37 159.8 236 48.7
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 4.2e-37 159.1 229 47.2
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 9.3e-37 157.9 239 46.4
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 1.6e-36 157.1 232 44.8
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 2.1e-36 156.8 233 51.5
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 3.6e-36 156.0 233 50.6
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 3.6e-36 156.0 233 50.6
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 3.6e-36 156.0 233 50.6
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 4.6e-36 155.6 230 50.4
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 7.9e-36 154.8 234 46.6
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 7.9e-36 154.8 234 43.2
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 1.0e-35 154.5 236 47.0
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 1.0e-35 154.5 229 48.0
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 1.8e-35 153.7 235 60.4
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 3.0e-35 152.9 230 45.7
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 5.1e-35 152.1 275 40.0
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 5.1e-35 152.1 233 42.9
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 1.1e-34 151.0 227 48.5
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.1e-34 151.0 233 49.4
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 1.5e-34 150.6 232 45.7
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 3.3e-34 149.4 231 44.6
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 3.3e-34 149.4 240 44.6
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 4.3e-34 149.1 233 46.8
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 7.4e-34 148.3 225 46.7
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 9.7e-34 147.9 233 48.1
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 2.2e-33 146.7 239 43.9
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 2.8e-33 146.4 238 44.1
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 3.7e-33 146.0 235 44.7
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 3.7e-33 146.0 233 48.9
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 1.8e-32 143.7 241 41.9
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 5.3e-32 142.1 242 45.5
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 5.3e-32 142.1 234 44.0
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 1.5e-31 140.6 225 42.2
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 1.5e-31 140.6 232 41.4
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.5e-31 140.6 243 46.5
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 2.0e-31 140.2 232 47.0
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 3.4e-31 139.4 249 41.8
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 5.9e-31 138.7 236 43.6
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 7.7e-31 138.3 236 39.8
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 1.3e-30 137.5 238 42.0
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 1.3e-30 137.5 231 47.6
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 2.2e-30 136.7 113 66.4
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.2e-30 136.7 233 48.1
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 8.5e-30 134.8 235 44.7
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 1.4e-29 134.0 222 47.3
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 1.9e-29 133.7 232 38.8
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 1.9e-29 133.7 241 42.3
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.5e-29 133.3 239 46.9
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 3.2e-29 132.9 239 47.3
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 7.2e-29 131.7 237 46.4
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 1.2e-28 131.0 246 44.3
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 1.4e-27 127.5 234 44.4
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 3.0e-27 126.3 233 39.9
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 3.0e-27 126.3 235 45.1
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 3.0e-27 126.3 235 39.6
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 6.7e-27 125.2 244 39.8
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 2.6e-26 123.2 228 37.3
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 7.4e-26 121.7 230 37.4
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 2.2e-25 120.2 220 42.7
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 4.8e-25 119.0 225 41.8
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 6.9e-24 115.2 228 39.0
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 1.0e-22 111.3 346 34.4
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 8.5e-22 108.2 230 44.8
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 1.9e-21 107.1 83 62.7
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 1.9e-21 107.1 84 65.5
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 3.2e-21 106.3 78 69.2
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 4.2e-21 105.9 86 69.8
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 1.6e-20 104.0 86 65.1
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 8.0e-20 101.7 72 65.3
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 1.4e-19 100.9 237 38.0
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 1.4e-19 100.9 70 68.6
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 1.4e-19 100.9 73 65.8
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 1.1e-18 97.8 70 65.7
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 2.6e-18 96.7 82 61.0
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 7.4e-18 95.1 113 52.2
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 2.2e-17 93.6 238 31.1
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 3.7e-17 92.8 199 38.7
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 3.7e-17 92.8 89 57.3
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 5.3e-16 89.0 84 61.9
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 4.5e-15 85.9 247 32.8
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 2.9e-14 83.2 238 34.9
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 8.5e-14 81.6 109 43.1
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 4.2e-13 79.3 87 49.4
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 2.1e-12 77.0 234 32.9
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 1.0e-11 74.7 116 44.0
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 1.4e-11 74.3 82 54.9
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 2.6e-10 70.1 245 32.2
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 1.1e-08 64.7 230 30.9
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 5.3e-08 62.4 236 25.8


User provided reference genes

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