Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 4.9e-307 1057.0 534 100.0
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.4e-266 922.5 535 88.6
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.6e-262 909.1 534 86.1
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.7e-262 907.9 535 86.4
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 4.0e-261 904.4 535 86.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.1e-253 878.2 535 85.6
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.6e-220 769.6 541 73.0
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.4e-216 756.5 538 72.1
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 8.8e-216 753.8 542 71.6
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.7e-214 749.6 542 71.4
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 9.1e-213 743.8 539 70.9
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.3e-211 740.0 539 70.9
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 2.3e-211 739.2 545 71.7
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 3.0e-208 728.8 542 69.7
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 5.2e-208 728.0 540 70.4
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 8.9e-208 727.2 541 70.1
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 8.9e-208 727.2 541 70.1
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 5.7e-207 724.5 536 70.5
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 2.8e-206 722.2 540 69.6
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 4.9e-206 721.5 539 69.6
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.3e-206 721.1 542 68.8
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 2.7e-204 715.7 538 69.1
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 5.9e-204 714.5 546 68.7
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 3.8e-203 711.8 546 68.3
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.1e-202 710.3 542 68.8
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 2.5e-202 709.1 541 67.5
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 6.1e-201 704.5 541 69.3
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 1.8e-200 703.0 542 67.5
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 2.2e-198 696.0 519 69.4
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 1.6e-196 689.9 521 68.9
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.6e-196 689.9 520 69.2
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.0e-195 687.2 532 67.1
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.3e-195 686.8 539 64.9
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.5e-194 683.3 539 66.0
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.9e-194 682.9 544 65.8
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 4.3e-194 681.8 503 69.4
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 2.1e-193 679.5 537 65.7
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 6.2e-193 677.9 542 65.3
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 6.2e-193 677.9 538 65.2
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.4e-192 676.8 540 65.4
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-191 673.7 537 65.0
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 1.2e-191 673.7 541 65.6
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 2.0e-191 672.9 543 65.2
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.9e-189 666.4 543 63.5
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 2.4e-189 666.0 542 64.9
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.2e-188 663.7 539 65.9
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 2.1e-188 662.9 537 65.0
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 2.7e-188 662.5 539 64.0
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 2.3e-187 659.4 542 64.2
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 6.6e-187 657.9 534 64.4
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.2e-185 653.7 542 63.5
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.4e-184 650.2 537 62.0
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 2.3e-184 649.4 542 63.3
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 2.0e-183 646.4 543 63.0
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.4e-183 645.6 545 64.4
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 3.4e-183 645.6 538 63.8
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 4.4e-183 645.2 545 63.5
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.4e-183 645.2 521 66.0
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 4.4e-183 645.2 524 65.3
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 4.4e-183 645.2 536 63.4
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 5.8e-183 644.8 547 62.9
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 1.3e-182 643.7 523 64.4
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.7e-182 643.3 536 63.2
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.2e-182 642.9 541 63.4
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.2e-182 642.9 521 65.6
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 4.9e-182 641.7 541 60.8
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.9e-182 641.7 521 65.6
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 5.4e-181 638.3 540 60.4
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.4e-181 638.3 521 65.1
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 5.4e-181 638.3 536 63.1
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.2e-181 637.5 521 65.3
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 1.2e-180 637.1 525 64.0
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 7.8e-180 634.4 540 60.6
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 3.9e-179 632.1 540 60.4
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 3.9e-179 632.1 543 63.2
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 6.6e-179 631.3 540 60.0
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 1.9e-178 629.8 543 60.0
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 7.3e-178 627.9 540 59.8
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 7.3e-178 627.9 540 59.8
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 7.3e-178 627.9 534 60.5
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.2e-177 624.8 522 64.4
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 3.4e-175 619.0 530 62.5
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.3e-174 617.1 529 61.4
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.2e-174 616.3 532 63.0
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 3.8e-174 615.5 541 58.8
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.9e-173 613.2 530 62.1
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 2.1e-172 609.8 540 58.5
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.7e-171 606.7 515 62.5
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 8.7e-171 604.4 542 61.4
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 4.3e-170 602.1 547 59.6
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 4.3e-170 602.1 571 57.6
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 3.6e-169 599.0 545 58.2
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 3.4e-167 592.4 541 58.6
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 2.2e-166 589.7 537 59.2
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 3.9e-163 578.9 537 56.8
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 1.7e-158 563.5 533 57.2
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 8.4e-158 561.2 414 70.0
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 5.4e-157 558.5 512 57.0
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.3e-153 547.4 548 54.7
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 6.9e-152 541.6 548 54.7
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 4.2e-141 505.8 413 63.2
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 1.1e-138 497.7 420 63.1
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 2.4e-136 490.0 428 62.1
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 4.3e-130 469.2 492 52.2
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 8.2e-129 464.9 551 48.3
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.1e-120 438.0 358 62.0
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.6e-119 433.3 486 50.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 8.5e-118 428.3 320 69.4
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 3.2e-117 426.4 570 41.1
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 5.5e-117 425.6 464 50.0
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 5.0e-110 402.5 538 46.7
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.8e-104 384.0 354 57.1
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.5e-101 374.4 425 52.2
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.8e-96 357.5 511 39.5
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 6.6e-94 349.0 496 41.7
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 8.0e-92 342.0 263 63.5
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-89 334.3 503 42.1
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 4.9e-89 332.8 318 57.9
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 8.3e-89 332.0 503 41.9
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 8.6e-86 322.0 347 52.7
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 7.3e-85 318.9 424 46.5
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.6e-84 317.8 509 37.3
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.1e-80 305.1 479 37.4
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 2.5e-69 267.3 275 55.6
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.1e-59 233.8 291 49.1
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 8.9e-59 232.3 285 50.9
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.0e-54 218.8 166 64.5
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 3.2e-40 170.6 120 74.2
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 9.3e-40 169.1 110 79.1
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 8.7e-38 162.5 165 57.0
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 6.2e-36 156.4 207 50.7
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.4e-34 150.6 105 73.3
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 2.9e-33 147.5 579 25.2
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 1.6e-31 141.7 113 66.4
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 2.5e-29 134.4 558 27.6
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.5e-29 134.4 104 67.3
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 3.3e-29 134.0 97 71.1
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.6e-28 131.7 458 29.3
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.4e-27 128.6 114 58.8
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 5.3e-27 126.7 85 71.8
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 7.6e-26 122.9 89 70.8
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 5.5e-24 116.7 498 24.7
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 2.7e-23 114.4 86 69.8
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 3.0e-14 84.3 162 38.3
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 3.9e-14 84.0 85 47.1
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 9.7e-13 79.3 569 23.2
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 1.7e-12 78.6 122 42.6
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 5.3e-11 73.6 60 66.7
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.4e-08 65.5 518 23.4


User provided reference genes

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