Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 2246.5 1123 100.0
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 2113.2 1123 93.5
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 2106.3 1123 93.1
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 2092.8 1123 92.5
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 2061.6 1123 91.5
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 2030.0 1123 90.8
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1993.4 1117 87.9
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1978.4 1122 86.6
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1971.4 1123 86.7
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1960.7 1126 86.6
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1960.3 1131 86.2
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1956.0 1125 86.2
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1946.8 1128 86.0
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1945.6 1125 85.6
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1944.5 1126 86.2
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1936.8 1125 85.3
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1930.6 1125 85.5
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1929.5 1122 84.5
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1926.8 1125 85.2
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1922.5 1129 85.0
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1918.7 1124 84.5
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1918.3 1096 87.0
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1916.4 1123 85.7
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1914.0 1140 84.2
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1911.3 1126 84.5
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1910.2 1124 83.5
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1909.8 1124 83.9
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1908.3 1124 84.2
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1904.8 1186 80.9
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1900.9 1140 83.8
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1899.8 1124 82.7
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1895.6 1128 83.4
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1894.0 1126 82.9
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1890.2 1124 83.1
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1888.2 1124 83.4
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1887.1 1122 83.4
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1882.5 1126 83.0
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1880.5 1127 83.1
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1878.6 1126 82.9
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1867.0 1129 81.4
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1865.5 1123 82.5
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1862.8 1129 81.2
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1860.9 1125 81.5
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1855.1 1151 80.0
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1854.3 1120 81.7
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1854.0 1126 81.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1848.2 1124 81.9
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1842.0 1121 81.0
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1840.9 1118 81.5
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1840.5 1127 80.4
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1833.5 1124 81.9
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1832.4 1123 80.6
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1825.8 1077 84.4
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1822.0 1123 80.2
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1821.2 1126 79.4
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1813.1 1125 80.8
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1807.7 1189 76.6
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1803.9 1162 77.9
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1803.9 1071 83.1
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1803.5 1127 79.0
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1801.2 1196 75.9
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1795.4 1036 85.8
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1793.5 1248 74.9
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1793.5 1119 79.5
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1787.7 1126 78.0
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1782.3 1122 79.1
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1778.1 1118 79.1
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1776.9 1079 81.4
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1761.5 1125 79.4
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1761.1 1122 77.8
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1760.7 1123 77.8
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1751.9 1121 77.5
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1747.6 1123 77.9
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1744.2 1317 69.6
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1741.1 1122 77.2
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1740.7 1122 77.1
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1740.3 1153 77.8
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1723.8 1123 76.5
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1720.3 1122 76.3
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1716.4 1122 76.1
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1711.8 1123 76.0
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1700.6 1123 75.8
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1699.5 1123 75.7
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1657.9 1125 74.0
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1652.1 1161 73.6
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1645.9 950 85.8
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1642.1 1155 72.1
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1627.8 1136 71.8
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1604.3 1118 72.6
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1555.0 1120 69.5
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1539.2 1106 71.9
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1535.0 1160 69.1
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1530.4 1120 68.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1527.3 1120 68.0
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1487.6 977 77.4
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1478.0 842 86.9
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1473.0 838 86.9
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1469.5 870 83.0
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1414.1 861 80.1
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1328.2 1128 62.6
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1287.7 783 82.0
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1276.9 819 76.7
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1244.2 678 89.8
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1135.9 1136 51.6
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 0.0e+00 1127.1 1518 45.1
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 5.4e-311 1071.2 1120 51.0
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 8.4e-301 1037.3 1152 48.6
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.9e-297 1026.2 529 96.6
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.1e-288 996.1 1150 47.1
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 2.3e-274 949.5 672 73.4
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.0e-269 934.1 668 69.0
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.3e-265 919.1 584 80.1
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 9.7e-265 917.5 1379 38.5
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.4e-247 860.5 737 60.8
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 4.1e-215 752.7 615 63.7
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.1e-210 736.5 435 84.4
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 1.9e-207 727.2 451 78.7
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 1.3e-187 661.4 420 73.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.9e-181 639.8 451 74.7
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.9e-180 637.5 590 53.6
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 7.7e-145 519.2 312 82.4
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 7.7e-137 492.7 371 72.2
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 2.6e-124 451.1 332 74.1
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 7.8e-113 412.9 1079 31.0
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 1.9e-90 338.6 767 31.9
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 5.8e-84 317.0 1452 22.3
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.4e-82 311.6 313 54.6
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.7e-81 308.1 234 70.9
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.3e-78 299.3 189 75.7
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 2.1e-73 282.0 198 77.8
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 5.8e-68 263.8 201 62.7
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.7e-67 262.3 294 51.0
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 6.7e-64 250.4 186 66.1
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 4.0e-61 241.1 212 61.8
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 2.2e-59 235.3 206 57.8
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.3e-54 217.2 593 32.7
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 4.1e-53 214.5 316 37.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 3.8e-51 208.0 212 59.4
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 7.9e-49 200.3 212 56.6
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 2.2e-46 192.2 327 43.4
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 3.4e-44 184.9 189 52.9
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.0e-43 183.3 254 41.7
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.4e-37 162.9 781 23.3
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 5.3e-37 161.0 183 52.5
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 8.0e-33 147.1 87 83.9
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.7e-30 139.4 87 78.2
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 7.0e-29 134.0 85 81.2
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 9.1e-29 133.7 138 56.5
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.1e-26 126.7 164 47.0
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.2e-26 125.2 85 67.1
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.4e-24 119.8 65 86.2
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 9.7e-23 113.6 161 42.2
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 4.8e-22 111.3 74 74.3
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.1e-18 100.1 67 70.1
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 7.2e-18 97.4 60 78.3
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.2e-17 96.7 64 71.9
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 8.8e-16 90.5 95 53.7
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.2e-15 90.1 80 61.2
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 4.4e-15 88.2 69 60.9
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 4.8e-14 84.7 58 74.1
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 1.8e-13 82.8 45 82.2
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.2e-12 80.1 42 83.3
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 5.9e-12 77.8 56 66.1
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.9e-10 72.8 43 74.4
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 2.1e-09 69.3 48 66.7
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 8.0e-09 67.4 71 52.1
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 1.8e-08 66.2 49 65.3
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 8.9e-08 63.9 34 76.5
arahy.Tifrunner.gnm1.ann1.RG0L3L Arachis hypogaea HOM05D004297 ORTHO05D085181 2.8e-06 58.9 71 39.4
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 2.8e-06 58.9 41 63.4


User provided reference genes

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