Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G350800 Theobroma cacao HOM05D002932 ORTHO05D003208 1.6e-91 339.3 161 100.0
COL.COLO4_06371 Corchorus olitorius HOM05D002932 ORTHO05D003208 4.7e-64 248.1 148 83.1
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 2.6e-62 242.3 143 81.8
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 9.9e-62 240.4 143 83.2
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 3.7e-48 195.3 146 71.2
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.2e-46 190.3 144 69.4
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.2e-46 190.3 144 69.4
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 1.8e-39 166.4 143 56.6
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 3.4e-38 162.2 148 53.4
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 2.1e-35 152.9 185 43.2
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 2.8e-32 142.5 148 51.4
Glyma.18G121000 Glycine max HOM05D002932 ORTHO05D003208 3.4e-30 135.6 144 53.5
Phvul.003G048900 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 3.4e-30 135.6 161 49.1
VMungo0251G1401 Vigna mungo HOM05D002932 ORTHO05D003208 6.5e-29 131.3 158 48.1
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 3.2e-28 129.0 142 47.9
Hma1.2p1_0783F.1_g216930 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 4.2e-28 128.6 144 47.2
Glyma.08G299600 Glycine max HOM05D002932 ORTHO05D003208 9.3e-28 127.5 145 49.0
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 2.7e-27 125.9 152 49.3
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 6.1e-27 124.8 158 46.2
Manes.05G028200 Manihot esculenta HOM05D002932 ORTHO05D003208 1.0e-26 124.0 148 45.3
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.8e-26 123.2 180 40.6
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 3.9e-26 122.1 142 48.6
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.1e-25 120.6 143 47.6
Haze_15577 Corylus avellana HOM05D002932 ORTHO05D003208 4.3e-25 118.6 131 51.9
Haze_15582 Corylus avellana HOM05D002932 ORTHO05D003208 4.3e-25 118.6 131 51.9
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 2.8e-24 115.9 161 41.0
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 1.4e-23 113.6 139 43.9
Glyma.02G106200 Glycine max HOM05D002932 ORTHO05D003208 9.1e-23 110.9 161 43.5
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 9.1e-23 110.9 162 44.4
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 1.2e-22 110.5 161 39.1
Lj2g0019721 Lotus japonicus HOM05D002932 ORTHO05D003208 1.5e-22 110.2 145 47.6
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 4.5e-22 108.6 148 43.2
Glyma.01G045900 Glycine max HOM05D002932 ORTHO05D003208 5.9e-22 108.2 159 42.1
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 5.9e-22 108.2 148 39.9
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 5.9e-22 108.2 142 45.1
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 1.7e-21 106.7 160 38.8
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.8e-21 105.5 161 41.6
MELO3C006073.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.9e-20 103.2 138 42.0
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.9e-20 103.2 163 38.0
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.9e-20 103.2 163 39.3
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 2.5e-20 102.8 159 37.7
Eucgr.E00092 Eucalyptus grandis HOM05D002932 ORTHO05D003208 3.2e-20 102.4 155 43.2
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.2e-19 100.5 161 39.8
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 2.1e-19 99.8 147 36.1
CsaV3_3G008520 Cucumis sativus L. HOM05D002932 ORTHO05D003208 2.1e-19 99.8 138 42.8
MSTRG.17303 Avicennia marina HOM05D002932 ORTHO05D003208 2.7e-19 99.4 184 32.6
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 2.7e-19 99.4 160 37.5
Sed0004021 Sechium edule HOM05D002932 ORTHO05D003208 2.7e-19 99.4 138 42.0
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 2.7e-19 99.4 147 37.4
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 4.7e-19 98.6 183 33.3
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 4.7e-19 98.6 161 42.9
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 6.1e-19 98.2 160 36.9
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 1.4e-18 97.1 147 36.7
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 3.9e-18 95.5 160 35.0
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 5.1e-18 95.1 146 41.8
MSTRG.20870 Avicennia marina HOM05D002932 ORTHO05D003208 6.7e-18 94.7 183 32.2
Oeu054360.1 Olea europaea HOM05D002932 ORTHO05D003208 6.7e-18 94.7 150 39.3
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 6.7e-18 94.7 146 42.5
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 8.8e-18 94.4 167 37.7
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 1.1e-17 94.0 154 39.0
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 1.1e-17 94.0 147 36.7
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 2.0e-17 93.2 145 36.6
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 2.0e-17 93.2 146 34.2
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 2.6e-17 92.8 146 34.2
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 3.3e-17 92.4 155 38.7
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 3.3e-17 92.4 147 36.7
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 9.7e-17 90.9 151 38.4
CSS0013096 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.7e-16 90.1 163 36.8
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 2.2e-16 89.7 163 37.4
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 2.8e-16 89.4 163 36.2
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 2.8e-16 89.4 170 36.5
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 3.7e-16 89.0 149 40.9
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 4.8e-16 88.6 158 36.1
TWI59G0718 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 6.3e-16 88.2 148 39.2
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 8.2e-16 87.8 161 37.3
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.1e-15 87.4 152 34.2
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 1.1e-15 87.4 142 35.2
SGA_v2.0_scaffold11G05690 Striga asiatica HOM05D002932 ORTHO05D003208 1.4e-15 87.0 125 40.0
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 1.8e-15 86.7 158 35.4
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 2.4e-15 86.3 152 34.2
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 2.4e-15 86.3 163 36.2
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 2.4e-15 86.3 146 33.6
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 4.1e-15 85.5 150 32.0
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 5.3e-15 85.1 160 36.9
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 6.9e-15 84.7 143 35.7
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 6.9e-15 84.7 152 33.6
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 9.1e-15 84.3 148 33.8
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 1.2e-14 84.0 156 34.0
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 1.2e-14 84.0 149 32.9
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 1.5e-14 83.6 154 35.7
SalBow3G2518 Salvia bowleyana HOM05D002932 ORTHO05D003208 2.0e-14 83.2 177 30.5
arahy.Tifrunner.gnm1.ann1.M9LJWH Arachis hypogaea HOM05D002932 ORTHO05D003208 2.6e-14 82.8 179 39.7
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 5.9e-14 81.6 145 33.8
Medtr5g039840 Medicago truncatula HOM05D002932 ORTHO05D003208 7.7e-14 81.3 145 40.7
Cc02_g38700 Coffea canephora HOM05D002932 ORTHO05D003208 1.0e-13 80.9 183 32.2
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.0e-13 80.9 151 35.1
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.0e-13 80.9 151 35.1
Medtr7g039720 Medicago truncatula HOM05D002932 ORTHO05D003208 1.0e-13 80.9 147 39.5
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.7e-13 80.1 149 36.2
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 2.9e-13 79.3 164 30.5
arahy.Tifrunner.gnm1.ann1.71GWZM Arachis hypogaea HOM05D002932 ORTHO05D003208 3.8e-13 79.0 177 33.3
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 5.0e-13 78.6 195 29.7
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.9e-12 76.6 152 33.6
Migut.B01809 Erythranthe guttata HOM05D002932 ORTHO05D003208 2.5e-12 76.3 124 36.3
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 2.5e-12 76.3 147 34.7
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 5.5e-12 75.1 152 33.6
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 7.2e-12 74.7 145 33.1
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 7.2e-12 74.7 162 34.6
Nitab4.5_0000305g0360 Nicotiana tabacum HOM05D002932 ORTHO05D003208 7.2e-12 74.7 198 28.8
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 1.2e-11 73.9 154 35.1
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 1.2e-11 73.9 154 30.5
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 2.1e-11 73.2 152 31.6
Nitab4.5_0009475g0010 Nicotiana tabacum HOM05D002932 ORTHO05D003208 2.1e-11 73.2 196 28.1
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 4.7e-11 72.0 154 31.8
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 8.0e-11 71.2 146 33.6
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 8.0e-11 71.2 146 30.8
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 1.0e-10 70.9 149 32.2
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 1.4e-10 70.5 146 35.6
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 1.8e-10 70.1 147 33.3
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 3.0e-10 69.3 152 34.2
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 3.9e-10 68.9 164 32.9
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 3.9e-10 68.9 148 32.4
Sopen01g039030 Solanum pennellii HOM05D002932 ORTHO05D003208 8.8e-10 67.8 190 31.1
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 2.0e-09 66.6 150 34.7
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 2.0e-09 66.6 149 31.5
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 2.0e-09 66.6 152 32.9
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 2.0e-09 66.6 169 33.7
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 2.6e-09 66.2 156 30.8
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 4.4e-09 65.5 160 32.5
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 4.4e-09 65.5 143 32.2
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 5.7e-09 65.1 164 32.3
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 5.7e-09 65.1 148 32.4
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 5.7e-09 65.1 151 34.4
MSTRG.27064 Avicennia marina HOM05D002932 ORTHO05D003208 7.4e-09 64.7 158 33.5
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 7.4e-09 64.7 152 32.9
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 1.3e-08 63.9 163 31.9
BcaB01g04222 Brassica carinata HOM05D002932 ORTHO05D003208 1.7e-08 63.5 158 31.0
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 1.7e-08 63.5 158 34.8
Aqoxy1G02826 Aquilegia oxysepala HOM05D002932 ORTHO05D003208 2.2e-08 63.2 184 32.1
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 2.2e-08 63.2 158 30.4
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 2.2e-08 63.2 143 32.9
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.2e-08 63.2 116 33.6
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.8e-08 62.8 143 32.2
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 3.7e-08 62.4 169 30.8
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 3.7e-08 62.4 162 32.7
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 4.8e-08 62.0 146 35.6
CAN.G694.15 Capsicum annuum HOM05D001716 ORTHO05D003208 4.8e-08 62.0 122 34.4
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 4.8e-08 62.0 157 30.6
CAN.G78.138 Capsicum annuum HOM05D002932 ORTHO05D003208 6.3e-08 61.6 137 33.6
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 6.3e-08 61.6 163 31.9
Solyc01g095240.3 Solanum lycopersicum HOM05D002932 ORTHO05D003208 6.3e-08 61.6 191 29.3
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 8.2e-08 61.2 168 30.4
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 1.1e-07 60.8 157 31.2
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 1.4e-07 60.5 156 30.1
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.4e-07 60.5 163 30.7
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.4e-07 60.5 163 30.7
CiPaw.02G048400 Carya illinoinensis HOM05D002932 ORTHO05D003208 1.8e-07 60.1 55 58.2
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 1.8e-07 60.1 149 32.2
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 1.8e-07 60.1 159 32.7
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 2.4e-07 59.7 97 36.1
SGA_v2.0_scaffold4G02273 Striga asiatica HOM05D002932 ORTHO05D003208 4.1e-07 58.9 194 30.9
arahy.Tifrunner.gnm1.ann1.R0FZSZ Arachis hypogaea HOM05D046058 ORTHO05D003208 5.3e-07 58.5 150 31.3
CAN.G959.5 Capsicum annuum HOM05D000001 ORTHO05D014548 5.3e-07 58.5 115 32.2
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 5.3e-07 58.5 166 28.9
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 7.0e-07 58.2 163 30.1
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 7.0e-07 58.2 163 30.1
unitig_62.g23806 Utricularia gibba HOM05D001977 ORTHO05D002246 7.0e-07 58.2 137 32.8
CANSAT94G0004 Cannabis sativa HOM05D002932 ORTHO05D003208 9.1e-07 57.8 163 30.1
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 1.2e-06 57.4 155 29.0
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 1.2e-06 57.4 155 29.0
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 1.2e-06 57.4 157 33.8
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.6e-06 57.0 145 33.8
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 1.6e-06 57.0 146 31.5
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.6e-06 57.0 144 29.2
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.0e-06 56.6 163 29.4
CARHR265860 Cardamine hirsuta HOM05D002932 ORTHO05D003208 3.5e-06 55.8 167 34.1
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 3.5e-06 55.8 145 30.3
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 3.5e-06 55.8 145 34.5
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 3.5e-06 55.8 159 29.6
arahy.Tifrunner.gnm1.ann1.7X5UPK Arachis hypogaea HOM05D046058 ORTHO05D003208 4.5e-06 55.5 143 32.9
Oeu063673.2 Olea europaea HOM05D002932 ORTHO05D003208 4.5e-06 55.5 166 28.9
A02p11520 Brassica napus HOM05D002932 ORTHO05D003208 5.9e-06 55.1 145 29.7
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 5.9e-06 55.1 156 28.8
CAN.G1578.6 Capsicum annuum HOM05D000129 ORTHO05D000997 7.7e-06 54.7 115 31.3


User provided reference genes

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