Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 5.7e-68 260.8 130 100.0
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 2.5e-39 165.6 137 70.1
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 6.4e-27 124.4 115 60.9
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 6.4e-27 124.4 115 60.9
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 6.6e-24 114.4 108 60.2
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 2.5e-23 112.5 108 60.2
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 7.3e-23 110.9 108 59.3
Gorai.007G106700 Gossypium raimondii HOM05D066925 ORTHO05D047563 2.1e-22 109.4 130 50.8
Gohir.A11G095550 Gossypium hirsutum HOM05D066925 ORTHO05D047563 1.1e-21 107.1 130 49.2
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.3e-19 100.1 127 48.8
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 4.2e-18 95.1 130 46.9
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 9.2e-18 94.0 120 44.2
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 3.0e-16 89.0 114 42.1
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 6.6e-16 87.8 111 51.4
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.3e-15 85.5 127 38.6
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 9.6e-15 84.0 131 42.0
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 2.8e-14 82.4 100 43.0
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.4e-13 80.1 124 39.5
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 1.4e-13 80.1 55 70.9
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.1e-13 79.0 143 39.2
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.1e-13 79.0 120 41.7
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 4.0e-13 78.6 124 39.5
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.0e-13 78.6 106 40.6
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 5.3e-13 78.2 128 38.3
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 1.2e-12 77.0 119 41.2
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.2e-12 77.0 119 41.2
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.6e-12 75.9 135 39.3
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 3.4e-12 75.5 114 39.5
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 4.4e-12 75.1 123 36.6
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 7.6e-12 74.3 113 39.8
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 9.9e-12 73.9 119 40.3
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 1.7e-11 73.2 108 39.8
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 1.7e-11 73.2 115 37.4
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 2.9e-11 72.4 108 45.4
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 2.9e-11 72.4 125 35.2
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 4.9e-11 71.6 118 44.1
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 6.4e-11 71.2 113 42.5
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 1.4e-10 70.1 105 41.9
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.4e-10 70.1 113 38.1
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.9e-10 69.7 55 54.5
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.9e-10 69.7 120 37.5
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 2.4e-10 69.3 47 61.7
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 2.4e-10 69.3 130 38.5
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 3.2e-10 68.9 99 39.4
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.2e-10 68.6 64 53.1
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 4.2e-10 68.6 118 37.3
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 4.2e-10 68.6 114 42.1
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 5.4e-10 68.2 84 45.2
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 5.4e-10 68.2 83 45.8
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 7.1e-10 67.8 87 47.1
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 7.1e-10 67.8 87 47.1
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 7.1e-10 67.8 87 47.1
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 7.1e-10 67.8 86 39.5
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.2e-09 67.0 129 38.0
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 1.2e-09 67.0 93 38.7
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.6e-09 66.6 99 40.4
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 3.5e-09 65.5 87 46.0
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 3.5e-09 65.5 55 58.2
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 4.6e-09 65.1 107 40.2
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 6.0e-09 64.7 111 37.8
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 7.8e-09 64.3 118 34.7
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 1.0e-08 63.9 79 46.8
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 1.0e-08 63.9 47 61.7
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 1.7e-08 63.2 85 43.5
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.7e-08 63.2 118 35.6
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.3e-08 62.8 121 37.2
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 3.0e-08 62.4 108 39.8
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 3.9e-08 62.0 84 45.2
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 3.9e-08 62.0 78 43.6
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 3.9e-08 62.0 91 44.0
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 8.7e-08 60.8 87 37.9
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 8.7e-08 60.8 99 41.4
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 1.9e-07 59.7 94 35.1
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 1.9e-07 59.7 100 38.0
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 1.9e-07 59.7 124 35.5
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 1.9e-07 59.7 47 55.3
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 3.3e-07 58.9 61 47.5
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 3.3e-07 58.9 110 33.6
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 5.6e-07 58.2 118 35.6
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 7.3e-07 57.8 70 48.6
Nitab4.5_0004161g0040 Nicotiana tabacum HOM05D007041 ORTHO05D008036 7.3e-07 57.8 63 46.0
PGSC0003DMG400012302 Solanum tuberosum HOM05D007041 ORTHO05D008036 7.3e-07 57.8 47 53.2
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 9.6e-07 57.4 93 38.7
Os01g0656300 Oryza sativa ssp. japonica HOM05D007041 ORTHO05D008036 1.3e-06 57.0 39 61.5
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 1.3e-06 57.0 29 79.3
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 1.3e-06 57.0 114 31.6
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 1.3e-06 57.0 96 34.4
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.6e-06 56.6 124 32.3
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 2.1e-06 56.2 104 31.7
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 2.1e-06 56.2 30 73.3
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 2.1e-06 56.2 69 46.4
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 2.1e-06 56.2 112 33.9
Nitab4.5_0000223g0230 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.8e-06 55.8 60 50.0
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 2.8e-06 55.8 88 37.5
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 3.6e-06 55.5 105 32.4
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 3.6e-06 55.5 47 48.9
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 4.8e-06 55.1 89 40.4
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 6.2e-06 54.7 43 55.8
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 8.1e-06 54.3 124 32.3
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 8.1e-06 54.3 91 35.2


User provided reference genes

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