Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G344900 Theobroma cacao HOM05D001772 ORTHO05D008903 9.1e-259 896.3 443 100.0
Gohir.A12G111500 Gossypium hirsutum HOM05D001772 ORTHO05D008903 2.6e-213 745.3 444 80.6
Gohir.D12G114800 Gossypium hirsutum HOM05D001772 ORTHO05D008903 2.6e-213 745.3 444 80.6
Gorai.008G124300 Gossypium raimondii HOM05D001772 ORTHO05D008903 3.8e-212 741.5 444 80.0
Duzib138G1524 Durio zibethinus HOM05D001772 ORTHO05D008903 1.8e-206 722.6 443 79.9
COL.COLO4_06307 Corchorus olitorius HOM05D001772 ORTHO05D008903 3.1e-198 695.3 444 77.7
Manes.05G024600 Manihot esculenta HOM05D001772 ORTHO05D008903 3.4e-189 665.2 443 72.5
Ciclev10020231m.g Citrus clementina HOM05D001772 ORTHO05D008903 4.5e-189 664.8 443 73.6
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 1.3e-183 646.7 436 72.0
Potri.014G096700 Populus trichocarpa HOM05D001772 ORTHO05D008903 2.2e-183 646.0 444 71.8
QL04p013773 Quercus lobata HOM05D001772 ORTHO05D008903 4.8e-183 644.8 442 70.8
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 1.1e-182 643.7 447 71.1
TAR375G0197 Trochodendron aralioides HOM05D001772 ORTHO05D008903 1.1e-179 633.6 446 69.5
Atru.chr5.644 Acer truncatum HOM05D001772 ORTHO05D008903 1.9e-179 632.9 447 71.6
GSVIVG01027076001 Vitis vinifera HOM05D001772 ORTHO05D008903 7.2e-179 630.9 444 68.5
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 1.2e-178 630.2 434 71.4
CSS0012714 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 6.9e-174 614.4 443 68.6
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 1.5e-173 613.2 449 66.4
TWI59G0809 Tripterygium wilfordii HOM05D001772 ORTHO05D008903 4.5e-173 611.7 445 68.3
RcHm_v2.0_Chr1g0359211 Rosa chinensis HOM05D001772 ORTHO05D008903 1.0e-172 610.5 444 68.2
vmacro13174 Vaccinium macrocarpon HOM05D001772 ORTHO05D008903 2.7e-170 602.4 444 67.8
TPR.G8988 Trifolium pratense HOM05D001772 ORTHO05D008903 6.1e-170 601.3 444 65.5
Prupe.2G185600 Prunus persica HOM05D001772 ORTHO05D008903 2.3e-169 599.4 444 67.8
Aa31LG5G920 Aethionema arabicum HOM05D001772 ORTHO05D008903 3.9e-169 598.6 445 65.6
MD07G1147600 Malus domestica HOM05D001772 ORTHO05D008903 3.9e-169 598.6 443 67.7
THA.LOC104825876 Tarenaya hassleriana HOM05D001772 ORTHO05D008903 3.9e-169 598.6 443 66.4
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 5.1e-169 598.2 437 66.6
PGR042G2345 Punica granatum HOM05D001772 ORTHO05D008903 1.1e-168 597.0 443 65.0
Haze_15635 Corylus avellana HOM05D001772 ORTHO05D008903 3.3e-168 595.5 457 65.4
Aqoxy7G00133 Aquilegia oxysepala HOM05D001772 ORTHO05D008903 5.7e-168 594.7 451 64.7
CARHR249250 Cardamine hirsuta HOM05D001772 ORTHO05D008903 4.8e-167 591.7 446 64.8
AT4G01040 Arabidopsis thaliana HOM05D001772 ORTHO05D008903 1.1e-166 590.5 447 64.9
Medtr5g025480 Medicago truncatula HOM05D001772 ORTHO05D008903 1.4e-166 590.1 446 65.7
Nn3g19051 Nelumbo nucifera HOM05D001772 ORTHO05D008903 4.1e-166 588.6 436 65.6
Carub.0006s3610 Capsella rubella HOM05D001772 ORTHO05D008903 1.2e-165 587.0 444 63.7
Eucgr.E00067 Eucalyptus grandis HOM05D001772 ORTHO05D008903 1.5e-165 586.6 448 65.6
Lj1g0009750 Lotus japonicus HOM05D001772 ORTHO05D008903 4.5e-165 585.1 435 65.5
Ca_25036_v3 Cicer arietinum L. HOM05D001772 ORTHO05D008903 1.0e-164 583.9 444 63.7
FvH4_7g16200 Fragaria vesca HOM05D001772 ORTHO05D008903 1.3e-164 583.6 445 66.5
VMungo0540G0918 Vigna mungo HOM05D001772 ORTHO05D008903 1.3e-164 583.6 392 70.4
Sp6g01100 Schrenkiella parvula HOM05D001772 ORTHO05D008903 1.7e-164 583.2 445 64.0
Rhsim07G0005700 Rhododendron simsii HOM05D001772 ORTHO05D008903 1.1e-163 580.5 449 65.3
Thhalv10028671m.g Eutrema salsugineum HOM05D001772 ORTHO05D008903 5.5e-163 578.2 411 67.4
Lalb_Chr04g0261581 Lupinus albus HOM05D001772 ORTHO05D008903 7.2e-163 577.8 429 65.7
Psat2g145680 Pisum sativum HOM05D001772 ORTHO05D008903 4.7e-162 575.1 441 63.5
MD01G1078600 Malus domestica HOM05D001772 ORTHO05D008903 1.8e-161 573.2 444 65.5
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.5e-160 570.1 444 66.0
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 2.0e-160 569.7 443 65.7
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 4.4e-160 568.5 437 64.5
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 5.7e-160 568.2 437 64.5
ClCG05G000920 Citrullus lanatus HOM05D001772 ORTHO05D008903 5.7e-160 568.2 444 65.5
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 7.4e-160 567.8 437 64.3
BcaB01g02345 Brassica carinata HOM05D001772 ORTHO05D008903 2.2e-159 566.2 435 64.4
BcaC01g06839 Brassica carinata HOM05D001772 ORTHO05D008903 2.8e-159 565.8 438 63.7
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 2.8e-159 565.8 437 64.1
Lsat_1_v5_gn_3_139600 Lactuca sativa HOM05D001772 ORTHO05D008903 4.8e-159 565.1 450 62.9
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.1e-158 562.0 439 65.6
arahy.Tifrunner.gnm1.ann1.NY4TXX Arachis hypogaea HOM05D001772 ORTHO05D008903 7.0e-158 561.2 455 60.4
Glyma.03G256800 Glycine max HOM05D001772 ORTHO05D008903 1.6e-157 560.1 391 69.3
Cc02_g39160 Coffea canephora HOM05D001772 ORTHO05D008903 2.0e-157 559.7 448 62.5
arahy.Tifrunner.gnm1.ann1.HV5NER Arachis hypogaea HOM05D001772 ORTHO05D008903 2.6e-157 559.3 452 61.1
CsaV3_3G008150 Cucumis sativus L. HOM05D001772 ORTHO05D008903 3.5e-157 558.9 444 64.4
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.5e-157 558.5 435 66.0
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 8.5e-156 554.3 405 67.9
PGSC0003DMG402033880 Solanum tuberosum HOM05D001772 ORTHO05D008903 1.6e-154 550.1 374 67.9
CSS0002891 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 2.1e-154 549.7 408 66.7
Oeu007903.1 Olea europaea HOM05D001772 ORTHO05D008903 3.6e-154 548.9 452 59.5
Sopen05g028720 Solanum pennellii HOM05D001772 ORTHO05D008903 5.2e-153 545.0 411 62.3
CAN.G239.5 Capsicum annuum HOM05D001772 ORTHO05D008903 1.2e-152 543.9 450 59.1
PSO135G0498 Papaver somniferum HOM05D001772 ORTHO05D008903 1.5e-152 543.5 397 64.0
Sc01g0002840 Simmondsia chinensis HOM05D001772 ORTHO05D008903 7.5e-152 541.2 444 60.6
Solyc05g050320.4 Solanum lycopersicum HOM05D001772 ORTHO05D008903 1.3e-151 540.4 364 67.6
AUR62004469 Chenopodium quinoa HOM05D001772 ORTHO05D008903 8.3e-151 537.7 438 60.5
EL10Ac1g00295 Beta vulgaris HOM05D001772 ORTHO05D008903 1.8e-150 536.6 445 59.3
MBI06_g46729_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D008903 2.4e-150 536.2 478 57.9
AUR62023481 Chenopodium quinoa HOM05D001772 ORTHO05D008903 3.1e-150 535.8 438 60.7
PSO384G4631 Papaver somniferum HOM05D001772 ORTHO05D008903 3.1e-150 535.8 397 64.5
SalBow5G1378 Salvia bowleyana HOM05D001772 ORTHO05D008903 3.1e-150 535.8 464 58.6
Migut.N01555 Erythranthe guttata HOM05D001772 ORTHO05D008903 4.1e-150 535.4 448 59.2
Sed0004684 Sechium edule HOM05D001772 ORTHO05D008903 4.1e-150 535.4 397 67.5
HanXRQChr11g0353031 Helianthus annuus HOM05D001772 ORTHO05D008903 1.0e-148 530.8 445 60.0
Peaxi162Scf00403g00519 Petunia axillaris HOM05D001772 ORTHO05D008903 5.0e-148 528.5 433 59.4
Phvul.006G111900 Phaseolus vulgaris HOM05D001772 ORTHO05D008903 5.2e-145 518.5 329 75.1
Ah.05g179760 Amaranthus hybridus HOM05D001772 ORTHO05D008903 1.2e-144 517.3 444 58.8
SGA_v2.0_scaffold11G05728 Striga asiatica HOM05D001772 ORTHO05D008903 2.2e-143 513.1 451 57.2
Lj9A595T55 Lonicera japonica HOM05D001772 ORTHO05D008903 1.4e-142 510.4 329 72.0
MELO3C006034.2 Cucumis melo HOM05D001772 ORTHO05D008903 1.0e-140 504.2 444 60.4
DCAR_005380 Daucus carota HOM05D001772 ORTHO05D008903 1.0e-140 504.2 538 50.4
Cpa.g.sc273.9 Carica papaya HOM05D001772 ORTHO05D008903 3.3e-139 499.2 357 71.4
Nitab4.5_0000258g0130 Nicotiana tabacum HOM05D001772 ORTHO05D008903 9.5e-139 497.7 438 57.3
CDE10G0091 Ceratophyllum demersum HOM05D001772 ORTHO05D008903 4.4e-136 488.8 443 56.7
Hund27212 Selenicereus undatus HOM05D001772 ORTHO05D008903 5.7e-136 488.4 482 52.3
HPP92_005515 Vanilla planifolia HOM05D001772 ORTHO05D008903 1.2e-133 480.7 442 55.9
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 2.5e-131 473.0 356 64.0
Zm00001eb358410 Zea mays HOM05D001772 ORTHO05D008903 4.7e-130 468.8 372 60.2
AL6G52340 Arabidopsis lyrata HOM05D001772 ORTHO05D008903 1.1e-107 394.4 253 71.9
Actinidia10113 Actinidia chinensis HOM05D001772 ORTHO05D008903 4.3e-99 365.9 290 63.4
Pp3c22_2040 Physcomitrium patens HOM05D001772 ORTHO05D008903 3.4e-96 356.3 373 45.8
SEGI_01392 Sequoiadendron giganteum HOM05D001772 ORTHO05D008903 2.7e-93 346.7 339 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1652 Anthoceros agrestis HOM05D001772 ORTHO05D008903 1.2e-85 321.2 417 42.2
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 5.1e-84 315.8 441 41.5
Mapoly0102s0038 Marchantia polymorpha HOM05D001772 ORTHO05D008903 1.5e-83 314.3 348 45.7
CiPaw.01G074400 Carya illinoinensis HOM05D001772 ORTHO05D008903 1.6e-82 310.8 240 64.6
SMO347G0199 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 3.8e-79 299.7 351 45.0
SMO167G0031 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 2.5e-78 297.0 336 46.1
CBR_g3968 Chara braunii HOM05D001772 ORTHO05D008903 4.3e-75 286.2 417 38.4
Cre03.g200650 Chlamydomonas reinhardtii HOM05D001772 ORTHO05D008903 3.0e-60 236.9 391 35.0
ATR0589G019 Amborella trichopoda HOM05D001772 ORTHO05D008903 6.5e-55 219.2 182 61.5
Os01g0619800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D008903 2.0e-40 171.0 139 60.4
Nitab4.5_0015177g0010 Nicotiana tabacum HOM05D001772 ORTHO05D000634 7.2e-38 162.5 119 67.2
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 1.3e-31 141.7 134 53.7
Glyma.19G255000 Glycine max HOM05D001772 ORTHO05D008903 1.3e-18 98.6 59 74.6
Nitab4.5_0015177g0020 Nicotiana tabacum HOM05D001772 ORTHO05D008903 1.4e-12 78.6 58 60.3
Zm00001eb098470 Zea mays HOM05D001772 ORTHO05D008903 6.6e-07 59.7 54 50.0


User provided reference genes

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