Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G343600 Theobroma cacao HOM05D002290 ORTHO05D002532 1.6e-49 199.1 101 100.0
COL.COLO4_06294 Corchorus olitorius HOM05D002290 ORTHO05D002532 5.1e-16 87.8 73 61.6
MD07G1148500 Malus domestica HOM05D002290 ORTHO05D002532 6.3e-14 80.9 73 53.4
Sc23g0002130 Simmondsia chinensis HOM05D002290 ORTHO05D002532 2.4e-13 79.0 70 51.4
Prupe.2G187000 Prunus persica HOM05D002290 ORTHO05D002532 9.1e-13 77.0 89 47.2
AUR62004481 Chenopodium quinoa HOM05D002290 ORTHO05D002532 1.2e-12 76.6 73 53.4
RcHm_v2.0_Chr1g0359321 Rosa chinensis HOM05D002290 ORTHO05D002532 1.2e-12 76.6 65 55.4
Cpa.g.sc96.4 Carica papaya HOM05D002290 ORTHO05D002532 2.6e-12 75.5 74 50.0
AUR62023472 Chenopodium quinoa HOM05D002290 ORTHO05D002532 2.6e-12 75.5 72 50.0
AUR62023535 Chenopodium quinoa HOM05D002290 ORTHO05D002532 2.6e-12 75.5 72 50.0
Aa31LG1G27790 Aethionema arabicum HOM05D002290 ORTHO05D002532 4.5e-12 74.7 76 51.3
COL.COLO4_10696 Corchorus olitorius HOM05D002290 ORTHO05D002532 4.5e-12 74.7 70 48.6
Hund14222 Selenicereus undatus HOM05D002290 ORTHO05D002532 4.5e-12 74.7 86 43.0
TAR629G2459 Trochodendron aralioides HOM05D002290 ORTHO05D002532 5.9e-12 74.3 72 50.0
TAR375G0429 Trochodendron aralioides HOM05D002290 ORTHO05D002532 2.2e-11 72.4 74 50.0
Hund27202 Selenicereus undatus HOM05D002290 ORTHO05D002532 2.9e-11 72.0 67 55.2
AT2G46470 Arabidopsis thaliana HOM05D002290 ORTHO05D002532 3.8e-11 71.6 85 49.4
AL4G45780 Arabidopsis lyrata HOM05D002290 ORTHO05D002532 5.0e-11 71.2 78 51.3
Sc01g0010300 Simmondsia chinensis HOM05D002290 ORTHO05D002532 5.0e-11 71.2 72 50.0
Carub.0004s2915 Capsella rubella HOM05D002290 ORTHO05D002532 6.5e-11 70.9 104 41.3
BcaC01g05067 Brassica carinata HOM05D002290 ORTHO05D002532 8.5e-11 70.5 87 49.4
Actinidia27317 Actinidia chinensis HOM05D002290 ORTHO05D002532 1.9e-10 69.3 65 55.4
BcaB01g03216 Brassica carinata HOM05D002290 ORTHO05D002532 1.9e-10 69.3 86 47.7
A03p25650 Brassica napus HOM05D002290 ORTHO05D002532 1.9e-10 69.3 87 48.3
Thhalv10001727m.g Eutrema salsugineum HOM05D002290 ORTHO05D002532 1.9e-10 69.3 78 50.0
C03p30610 Brassica napus HOM05D002290 ORTHO05D002532 3.2e-10 68.6 81 51.9
BolC3t15411H Brassica oleracea HOM05D002290 ORTHO05D002532 3.2e-10 68.6 81 51.9
BraA03t11780Z Brassica rapa HOM05D002290 ORTHO05D002532 3.2e-10 68.6 89 47.2
PGR042G2044 Punica granatum HOM05D002290 ORTHO05D002532 4.2e-10 68.2 73 54.8
THA.LOC104817358 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 4.2e-10 68.2 103 40.8
Actinidia22155 Actinidia chinensis HOM05D002290 ORTHO05D002532 7.2e-10 67.4 65 52.3
Ciclev10020194m.g Citrus clementina HOM05D002290 ORTHO05D002532 1.2e-09 66.6 70 44.3
Potri.003G139800 Populus trichocarpa HOM05D002290 ORTHO05D002532 1.6e-09 66.2 65 49.2
Sp4g28470 Schrenkiella parvula HOM05D002290 ORTHO05D002532 2.1e-09 65.9 79 51.9
THA.LOC104827625 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 2.1e-09 65.9 75 45.3
Lj2A168T57 Lonicera japonica HOM05D002290 ORTHO05D002532 2.7e-09 65.5 63 52.4
Manes.12G013800 Manihot esculenta HOM05D002290 ORTHO05D002532 2.7e-09 65.5 70 47.1
Cpa.g.sc1.159 Carica papaya HOM05D002290 ORTHO05D002532 3.6e-09 65.1 67 47.8
PGR042G3133 Punica granatum HOM05D002290 ORTHO05D002532 3.6e-09 65.1 69 46.4
Atru.chr9.1999 Acer truncatum HOM05D002290 ORTHO05D002532 6.1e-09 64.3 70 42.9
CDE02G2069 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 6.1e-09 64.3 84 42.9
Lj8A208G55 Lonicera japonica HOM05D002290 ORTHO05D002532 8.0e-09 63.9 65 49.2
Haze_04372 Corylus avellana HOM05D002290 ORTHO05D002532 1.4e-08 63.2 75 44.0
Eucgr.E00860 Eucalyptus grandis HOM05D002290 ORTHO05D002532 1.8e-08 62.8 64 50.0
Glyma.07G235200 Glycine max HOM05D002290 ORTHO05D002532 1.8e-08 62.8 70 47.1
TWI81G0556 Tripterygium wilfordii HOM05D002290 ORTHO05D002532 1.8e-08 62.8 70 48.6
ClCG07G015030 Citrullus lanatus HOM05D002290 ORTHO05D002532 2.3e-08 62.4 70 45.7
EL10Ac5g12913 Beta vulgaris HOM05D002290 ORTHO05D002532 3.0e-08 62.0 74 43.2
Potri.001G091800 Populus trichocarpa HOM05D002290 ORTHO05D002532 3.0e-08 62.0 70 47.1
CSS0030360 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 4.0e-08 61.6 65 44.6
Duzib068G0387 Durio zibethinus HOM05D002290 ORTHO05D002532 4.0e-08 61.6 70 42.9
AUR62019837 Chenopodium quinoa HOM05D002290 ORTHO05D002532 5.2e-08 61.2 65 47.7
MELO3C016291.2 Cucumis melo HOM05D002290 ORTHO05D002532 5.2e-08 61.2 66 47.0
CARHR141770 Cardamine hirsuta HOM05D002290 ORTHO05D002532 6.7e-08 60.8 81 46.9
AUR62010838 Chenopodium quinoa HOM05D002290 ORTHO05D002532 6.7e-08 60.8 63 49.2
Atru.chr12.1156 Acer truncatum HOM05D002290 ORTHO05D002532 8.8e-08 60.5 65 43.1
Cfa006406 Carpinus fangiana HOM05D002290 ORTHO05D002532 8.8e-08 60.5 77 41.6
Nn1g04476 Nelumbo nucifera HOM05D002290 ORTHO05D002532 8.8e-08 60.5 72 45.8
CSS0016367 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 1.1e-07 60.1 65 43.1
CSS0049945 Camellia sinensis var. sinensis HOM05D002290 ORTHO05D002532 1.1e-07 60.1 65 43.1
CAN.G532.120 Capsicum annuum HOM05D002290 ORTHO05D002532 1.1e-07 60.1 74 44.6
Cfa006407 Carpinus fangiana HOM05D002290 ORTHO05D002532 1.1e-07 60.1 75 42.7
CiPaw.11G121700 Carya illinoinensis HOM05D002290 ORTHO05D002532 1.1e-07 60.1 65 46.2
Eucgr.E00058 Eucalyptus grandis HOM05D002290 ORTHO05D002532 1.1e-07 60.1 75 45.3
Gohir.A12G236300 Gossypium hirsutum HOM05D002290 ORTHO05D002532 1.1e-07 60.1 72 40.3
Gohir.D12G237500 Gossypium hirsutum HOM05D002290 ORTHO05D002532 1.1e-07 60.1 72 41.7
Gorai.008G254200 Gossypium raimondii HOM05D002290 ORTHO05D002532 1.1e-07 60.1 72 41.7
THA.LOC104817347 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 1.1e-07 60.1 92 39.1
CsaV3_4G006570 Cucumis sativus L. HOM05D002290 ORTHO05D002532 1.5e-07 59.7 66 45.5
Lalb_Chr25g0283571 Lupinus albus HOM05D002290 ORTHO05D002532 1.5e-07 59.7 90 43.3
Dinv38832 Davidia involucrata HOM05D002290 ORTHO05D002532 2.0e-07 59.3 65 46.2
Hma1.2p1_1746F.1_g300340 Hydrangea macrophylla HOM05D002290 ORTHO05D002532 2.0e-07 59.3 63 47.6
Hma1.2p1_1746F.1_g300401 Hydrangea macrophylla HOM05D002290 ORTHO05D002532 2.0e-07 59.3 63 47.6
Rhsim07G0082400 Rhododendron simsii HOM05D002290 ORTHO05D002532 2.0e-07 59.3 75 41.3
Aa31LG5G18540 Aethionema arabicum HOM05D002290 ORTHO05D002532 2.6e-07 58.9 70 44.3
CAN.G792.39 Capsicum annuum HOM05D002290 ORTHO05D002532 2.6e-07 58.9 77 40.3
Sed0023168 Sechium edule HOM05D002290 ORTHO05D002532 2.6e-07 58.9 66 45.5
Solyc08g008320.3 Solanum lycopersicum HOM05D002290 ORTHO05D002532 2.6e-07 58.9 77 42.9
Duzib205G0860 Durio zibethinus HOM05D002290 ORTHO05D002532 4.4e-07 58.2 70 41.4
Lalb_Chr20g0108181 Lupinus albus HOM05D002290 ORTHO05D002532 7.5e-07 57.4 69 44.9
Peaxi162Scf00074g00928 Petunia axillaris HOM05D002290 ORTHO05D002532 7.5e-07 57.4 69 44.9
Sed0014582 Sechium edule HOM05D002290 ORTHO05D002532 7.5e-07 57.4 75 41.3
PGSC0003DMG400005839 Solanum tuberosum HOM05D002290 ORTHO05D002532 7.5e-07 57.4 74 41.9
Sopen08g004180 Solanum pennellii HOM05D002290 ORTHO05D002532 9.7e-07 57.0 74 43.2
THA.LOC104817356 Tarenaya hassleriana HOM05D002290 ORTHO05D012775 9.7e-07 57.0 75 41.3
Aa31LG11G1480 Aethionema arabicum HOM05D002290 ORTHO05D002532 1.3e-06 56.6 70 41.4
CARHR275840 Cardamine hirsuta HOM05D002290 ORTHO05D002532 1.3e-06 56.6 76 43.4
Ca_18517_v3 Cicer arietinum L. HOM05D002290 ORTHO05D002532 1.3e-06 56.6 83 42.2
Gorai.007G026600 Gossypium raimondii HOM05D002290 ORTHO05D002532 1.3e-06 56.6 70 38.6
Glyma.07G193700 Glycine max HOM05D002290 ORTHO05D002532 1.7e-06 56.2 68 47.1
Gohir.D11G024800 Gossypium hirsutum HOM05D002290 ORTHO05D002532 2.2e-06 55.8 70 37.1
Sp2g25220 Schrenkiella parvula HOM05D002290 ORTHO05D002532 2.2e-06 55.8 73 43.8
Actinidia04202 Actinidia chinensis HOM05D002290 ORTHO05D002532 2.8e-06 55.5 65 47.7
Hma1.2p1_0359F.1_g135260 Hydrangea macrophylla HOM05D002290 ORTHO05D002532 2.8e-06 55.5 65 49.2
THA.LOC104817352 Tarenaya hassleriana HOM05D002290 ORTHO05D002532 3.7e-06 55.1 74 41.9
Dinv37532 Davidia involucrata HOM05D002290 ORTHO05D002532 4.8e-06 54.7 65 44.6
Peaxi162Scf00102g01756 Petunia axillaris HOM05D002290 ORTHO05D002532 4.8e-06 54.7 64 45.3
QL02p030669 Quercus lobata HOM05D002290 ORTHO05D002532 4.8e-06 54.7 69 36.2
Aqoxy7G00111 Aquilegia oxysepala HOM05D002290 ORTHO05D002532 6.3e-06 54.3 76 40.8
CDE09G1109 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 6.3e-06 54.3 64 40.6
Gohir.D03G083100 Gossypium hirsutum HOM05D002290 ORTHO05D002532 6.3e-06 54.3 80 35.0
Lj2g0019811 Lotus japonicus HOM05D002290 ORTHO05D002532 6.3e-06 54.3 70 44.3
Lalb_Chr25g0283581 Lupinus albus HOM05D002290 ORTHO05D002532 6.3e-06 54.3 69 43.5
MBI06_g08461_MAGBIO Magnolia biondii HOM05D002290 ORTHO05D002532 6.3e-06 54.3 76 36.8
Psat4g003840 Pisum sativum HOM05D002290 ORTHO05D002532 6.3e-06 54.3 83 42.2
Solyc08g082300.3 Solanum lycopersicum HOM05D002290 ORTHO05D002532 6.3e-06 54.3 74 41.9
Sopen08g030560 Solanum pennellii HOM05D002290 ORTHO05D002532 6.3e-06 54.3 74 41.9


User provided reference genes

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