Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G331100 Theobroma cacao HOM05D006082 ORTHO05D007616 7.4e-124 447.2 225 100.0
Gohir.A11G102200 Gossypium hirsutum HOM05D006082 ORTHO05D007616 1.4e-101 373.2 225 83.6
Gorai.007G114300 Gossypium raimondii HOM05D006082 ORTHO05D007616 2.3e-101 372.5 225 84.0
Duzib133G0864 Durio zibethinus HOM05D006082 ORTHO05D007616 3.4e-100 368.6 225 84.0
Potri.014G107300 Populus trichocarpa HOM05D006082 ORTHO05D007616 7.8e-81 304.3 223 68.2
Gohir.D11G106800 Gossypium hirsutum HOM05D006082 ORTHO05D007616 1.3e-80 303.5 225 72.4
GSVIVG01027464001 Vitis vinifera HOM05D006082 ORTHO05D007616 2.1e-78 296.2 223 69.1
QL01p017595 Quercus lobata HOM05D006082 ORTHO05D007616 2.8e-78 295.8 223 67.3
Ciclev10022037m.g Citrus clementina HOM05D006082 ORTHO05D007616 2.0e-76 289.7 223 70.0
Atru.chr5.795 Acer truncatum HOM05D006082 ORTHO05D007616 4.4e-76 288.5 219 68.0
TWI14G1025 Tripterygium wilfordii HOM05D006082 ORTHO05D007616 4.9e-75 285.0 219 66.7
Prupe.2G201100 Prunus persica HOM05D006082 ORTHO05D007616 2.4e-74 282.7 223 67.3
MD01G1091900 Malus domestica HOM05D006082 ORTHO05D007616 9.2e-74 280.8 223 66.8
FAN06G3489 Fragaria x ananassa HOM05D006082 ORTHO05D007616 5.1e-72 275.0 223 65.9
RcHm_v2.0_Chr1g0361381 Rosa chinensis HOM05D006082 ORTHO05D007616 1.5e-71 273.5 223 65.5
FvH4_7g17940 Fragaria vesca HOM05D006082 ORTHO05D007616 2.5e-71 272.7 223 65.5
Eucgr.G03261 Eucalyptus grandis HOM05D006082 ORTHO05D007616 1.2e-70 270.4 219 65.3
Actinidia33031 Actinidia chinensis HOM05D006082 ORTHO05D007616 2.1e-70 269.6 222 63.5
TPR.G16094 Trifolium pratense HOM05D006082 ORTHO05D007616 2.1e-70 269.6 224 62.5
FAN06G1515 Fragaria x ananassa HOM05D006082 ORTHO05D007616 2.8e-70 269.2 229 64.2
Haze_15761 Corylus avellana HOM05D006082 ORTHO05D007616 1.1e-69 267.3 223 64.1
TAR375G0813 Trochodendron aralioides HOM05D006082 ORTHO05D007616 4.0e-69 265.4 219 62.6
Lj1g0004702 Lotus japonicus HOM05D006082 ORTHO05D007616 8.9e-69 264.2 222 60.8
ECA238G2330 Erigeron canadensis HOM05D006082 ORTHO05D007616 2.6e-68 262.7 219 58.4
Dinv04258 Davidia involucrata HOM05D006082 ORTHO05D007616 5.8e-68 261.5 223 61.0
FAN03G2817 Fragaria x ananassa HOM05D006082 ORTHO05D007616 1.7e-67 260.0 233 62.2
Phvul.001G121700 Phaseolus vulgaris HOM05D006082 ORTHO05D007616 2.2e-67 259.6 223 61.4
Psat3g079600 Pisum sativum HOM05D006082 ORTHO05D007616 2.2e-67 259.6 224 60.7
Lalb_Chr17g0343121 Lupinus albus HOM05D006082 ORTHO05D007616 2.9e-67 259.2 224 61.2
HanXRQChr14g0454421 Helianthus annuus HOM05D006082 ORTHO05D007616 2.4e-66 256.1 224 57.6
Medtr7g089460 Medicago truncatula HOM05D006082 ORTHO05D007616 4.2e-66 255.4 224 59.8
COL.COLO4_23067 Corchorus olitorius HOM05D006082 ORTHO05D007616 5.4e-66 255.0 142 87.3
PGR031G0479 Punica granatum HOM05D006082 ORTHO05D007616 9.3e-66 254.2 229 59.0
CANSAT56G1086 Cannabis sativa HOM05D006082 ORTHO05D007616 4.6e-65 251.9 202 67.3
Glyma.03G126300 Glycine max HOM05D006082 ORTHO05D007616 1.3e-64 250.4 223 58.7
Migut.L00265 Erythranthe guttata HOM05D006082 ORTHO05D007616 3.0e-64 249.2 222 56.3
THA.LOC104815904 Tarenaya hassleriana HOM05D006082 ORTHO05D007616 6.6e-64 248.1 222 57.7
Glyma.19G129400 Glycine max HOM05D006082 ORTHO05D007616 8.7e-64 247.7 222 59.5
MSTRG.15681 Avicennia marina HOM05D006082 ORTHO05D007616 1.9e-63 246.5 222 56.8
FAN10G2982 Fragaria x ananassa HOM05D006082 ORTHO05D007616 2.1e-62 243.0 236 58.9
Nn1g00467 Nelumbo nucifera HOM05D006082 ORTHO05D007616 4.8e-62 241.9 219 58.4
Sp1g01290 Schrenkiella parvula HOM05D006082 ORTHO05D007616 8.1e-62 241.1 224 55.8
Cc03_g11310 Coffea canephora HOM05D006082 ORTHO05D007616 1.1e-61 240.7 222 56.3
A10p00890 Brassica napus HOM05D006082 ORTHO05D007616 1.8e-61 240.0 221 57.5
ATR1136G056 Amborella trichopoda HOM05D006082 ORTHO05D007616 2.4e-61 239.6 219 56.6
CAN.G691.19 Capsicum annuum HOM05D006082 ORTHO05D007616 3.1e-61 239.2 223 56.1
PGSC0003DMG400016241 Solanum tuberosum HOM05D006082 ORTHO05D007616 3.1e-61 239.2 223 56.1
BraA10t42369Z Brassica rapa HOM05D006082 ORTHO05D007616 4.0e-61 238.8 221 57.0
Solyc11g008790.3 Solanum lycopersicum HOM05D006082 ORTHO05D007616 2.0e-60 236.5 223 56.1
Sopen11g004570 Solanum pennellii HOM05D006082 ORTHO05D007616 2.0e-60 236.5 223 56.1
C05p00920 Brassica napus HOM05D006082 ORTHO05D007616 2.6e-60 236.1 223 55.6
CARHR250170 Cardamine hirsuta HOM05D006082 ORTHO05D007616 2.6e-60 236.1 223 57.4
BolC5t28877H Brassica oleracea HOM05D006082 ORTHO05D007616 3.4e-60 235.7 221 55.7
AL1G11510 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 4.4e-60 235.3 223 56.5
Ca_08380_v3 Cicer arietinum L. HOM05D006082 ORTHO05D007616 4.4e-60 235.3 197 61.4
BcaB03g13546 Brassica carinata HOM05D006082 ORTHO05D007616 5.8e-60 235.0 223 55.2
arahy.Tifrunner.gnm1.ann1.9R6DDK Arachis hypogaea HOM05D006082 ORTHO05D007616 9.9e-60 234.2 222 57.7
CsaV3_3G007110 Cucumis sativus L. HOM05D006082 ORTHO05D007616 9.9e-60 234.2 224 55.8
Carub.0001s0120 Capsella rubella HOM05D006082 ORTHO05D007616 2.2e-59 233.0 221 55.2
arahy.Tifrunner.gnm1.ann1.6SRZ86 Arachis hypogaea HOM05D006082 ORTHO05D007616 3.8e-59 232.3 222 56.8
CARHR001490 Cardamine hirsuta HOM05D006082 ORTHO05D007616 4.9e-59 231.9 223 54.7
Carub.0006s3568 Capsella rubella HOM05D006082 ORTHO05D007616 6.4e-59 231.5 220 56.8
Sp6g01450 Schrenkiella parvula HOM05D006082 ORTHO05D007616 1.1e-58 230.7 222 56.8
AL6G51830 Arabidopsis lyrata HOM05D006082 ORTHO05D007616 1.4e-58 230.3 219 56.6
Thhalv10028930m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 1.4e-58 230.3 223 54.7
Thhalv10008618m.g Eutrema salsugineum HOM05D006082 ORTHO05D007616 9.3e-58 227.6 223 54.7
A09p01070 Brassica napus HOM05D006082 ORTHO05D007616 1.2e-57 227.3 221 56.1
C09p01160 Brassica napus HOM05D006082 ORTHO05D007616 1.2e-57 227.3 221 55.7
Manes.05G014900 Manihot esculenta HOM05D006082 ORTHO05D007616 1.6e-57 226.9 172 67.4
MELO3C005932.2 Cucumis melo HOM05D006082 ORTHO05D007616 2.7e-57 226.1 230 54.8
Aqoxy5G00354 Aquilegia oxysepala HOM05D006082 ORTHO05D007616 6.0e-57 224.9 219 53.9
ClCG05G000050 Citrullus lanatus HOM05D006082 ORTHO05D007616 7.9e-57 224.6 236 53.8
PSO675G6921 Papaver somniferum HOM05D006082 ORTHO05D007616 1.0e-56 224.2 219 54.8
PSO675G6409 Papaver somniferum HOM05D006082 ORTHO05D007616 3.0e-56 222.6 219 53.9
CDE08G0270 Ceratophyllum demersum HOM05D006082 ORTHO05D007616 1.5e-55 220.3 218 52.3
Aa31LG1G10340 Aethionema arabicum HOM05D006082 ORTHO05D007616 5.6e-55 218.4 227 52.4
CANSAT56G0035 Cannabis sativa HOM05D006082 ORTHO05D007616 6.2e-54 214.9 202 61.4
HPP92_015681 Vanilla planifolia HOM05D006082 ORTHO05D007616 3.1e-53 212.6 217 50.7
BraA09t35778Z Brassica rapa HOM05D006082 ORTHO05D007616 4.0e-53 212.2 249 49.8
BolC9t53049H Brassica oleracea HOM05D006082 ORTHO05D007616 5.3e-53 211.8 250 49.2
CiPaw.01G087100 Carya illinoinensis HOM05D006082 ORTHO05D007616 6.9e-53 211.5 179 64.8
Ah.01g019340 Amaranthus hybridus HOM05D006082 ORTHO05D007616 1.3e-51 207.2 220 51.4
Os03g0784300 Oryza sativa ssp. japonica HOM05D006082 ORTHO05D007616 2.2e-51 206.5 218 52.8
FAN01G2730 Fragaria x ananassa HOM05D006082 ORTHO05D007616 7.1e-50 201.4 221 55.7
Aa31LG5G1260 Aethionema arabicum HOM05D006082 ORTHO05D007616 1.2e-49 200.7 222 51.4
AT4G01510 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 2.1e-49 199.9 192 56.2
AUR62016743 Chenopodium quinoa HOM05D006082 ORTHO05D007616 4.6e-49 198.7 218 49.5
SEGI_04405 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 2.1e-46 189.9 221 48.0
Nitab4.5_0000743g0220 Nicotiana tabacum HOM05D006082 ORTHO05D007616 3.7e-46 189.1 229 47.6
MBI06_g35217_MAGBIO Magnolia biondii HOM05D006082 ORTHO05D007616 6.2e-46 188.3 222 49.1
vmacro11192 Vaccinium macrocarpon HOM05D006082 ORTHO05D007616 6.2e-46 188.3 305 43.0
unitig_899.g14456 Utricularia gibba HOM05D003044 ORTHO05D007616 1.1e-45 187.6 199 50.3
Lsat_1_v5_gn_2_88861 Lactuca sativa HOM05D006082 ORTHO05D007616 6.5e-43 178.3 199 51.3
Potri.002G181700 Populus trichocarpa HOM05D006082 ORTHO05D007616 8.4e-43 177.9 222 47.7
Sc24g0001860 Simmondsia chinensis HOM05D006082 ORTHO05D007616 8.7e-40 167.9 200 49.0
CSS0012451 Camellia sinensis var. sinensis HOM05D006082 ORTHO05D007616 1.6e-38 163.7 192 51.0
Peaxi162Scf00090g00046 Petunia axillaris HOM05D006082 ORTHO05D007616 3.4e-36 156.0 254 40.9
AT1G01020 Arabidopsis thaliana HOM05D006082 ORTHO05D007616 5.9e-36 155.2 180 47.8
C05p00960 Brassica napus HOM05D006082 ORTHO05D007616 5.9e-36 155.2 305 36.1
Zm00001eb059810 Zea mays HOM05D006082 ORTHO05D007616 2.9e-35 152.9 192 44.8
BolC5t28880H Brassica oleracea HOM05D006082 ORTHO05D007616 5.5e-34 148.7 297 36.7
Pp3c10_9330 Physcomitrium patens HOM05D006082 ORTHO05D007616 9.3e-34 147.9 221 43.9
AagrBONN_evm.TU.Sc2ySwM_340.22 Anthoceros agrestis HOM05D006082 ORTHO05D007616 3.0e-32 142.9 213 42.7
GSVIVG01003191001 Vitis vinifera HOM05D006082 ORTHO05D007616 3.0e-32 142.9 130 59.2
EL10Ac9g21719 Beta vulgaris HOM05D006082 ORTHO05D003517 5.1e-32 142.1 167 47.9
DCAR_014739 Daucus carota HOM05D006082 ORTHO05D007616 8.7e-32 141.4 219 38.8
Migut.L00585 Erythranthe guttata HOM05D006082 ORTHO05D007616 1.1e-31 141.0 88 68.2
MD07G1162500 Malus domestica HOM05D006082 ORTHO05D007616 1.1e-31 141.0 139 54.7
Nitab4.5_0001677g0060 Nicotiana tabacum HOM05D006082 ORTHO05D007616 1.3e-30 137.5 279 35.5
Hma1.2p1_0262F.1_g105255 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 8.2e-30 134.8 75 77.3
Hma1.2p1_0451F.1_g155790 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 4.1e-29 132.5 73 78.1
Mapoly0050s0018 Marchantia polymorpha HOM05D006082 ORTHO05D007616 1.0e-27 127.9 202 37.6
SEGI_20928 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 1.0e-27 127.9 147 46.3
CBR_g1036 Chara braunii HOM05D006082 ORTHO05D007616 9.4e-26 121.3 236 34.3
Hma1.2p1_0451F.1_g155800 Hydrangea macrophylla HOM05D006082 ORTHO05D007616 1.6e-25 120.6 117 58.1
SMO367G0224 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 1.6e-25 120.6 203 38.9
Sed0024729 Sechium edule HOM05D006082 ORTHO05D007616 1.3e-22 110.9 120 53.3
arahy.Tifrunner.gnm1.ann1.PGF6M0 Arachis hypogaea HOM05D006082 ORTHO05D007616 2.8e-22 109.8 242 34.3
BcaC05g24597 Brassica carinata HOM05D006082 ORTHO05D007616 1.2e-20 104.4 195 35.9
QL03p043604 Quercus lobata HOM05D006082 ORTHO05D007616 1.3e-19 100.9 194 37.1
GSVIVG01003186001 Vitis vinifera HOM05D006082 ORTHO05D007616 6.1e-17 92.0 70 70.0
C05p00940 Brassica napus HOM05D006082 ORTHO05D007616 7.4e-15 85.1 106 48.1
SMO230G0051 Selaginella moellendorffii HOM05D006082 ORTHO05D007616 1.9e-10 70.5 170 32.4
MD07G1162600 Malus domestica HOM05D006082 ORTHO05D007616 7.2e-10 68.6 58 63.8
BcaC05g24595 Brassica carinata HOM05D006082 ORTHO05D007616 3.3e-07 59.7 81 50.6
CAN.G34.12 Capsicum annuum HOM05D006082 ORTHO05D007616 7.5e-07 58.5 46 63.0
SEGI_27828 Sequoiadendron giganteum HOM05D006082 ORTHO05D007616 2.2e-06 57.0 34 70.6


User provided reference genes

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