Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 4.8e-174 614.4 306 100.0
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 7.2e-154 547.4 306 89.9
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 1.4e-141 506.5 301 84.7
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 4.0e-120 435.3 305 70.2
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 2.9e-118 429.1 306 67.0
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 8.3e-118 427.6 302 70.2
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 2.4e-117 426.0 303 68.3
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 4.1e-117 425.2 306 66.3
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 6.2e-113 411.4 297 67.3
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 6.2e-113 411.4 305 66.2
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 8.0e-113 411.0 298 65.1
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 2.3e-112 409.5 291 68.7
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 1.5e-111 406.8 301 66.8
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 3.4e-111 405.6 291 69.8
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 2.9e-110 402.5 303 64.4
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 3.2e-109 399.1 309 65.0
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 1.9e-106 389.8 297 65.7
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 2.8e-105 386.0 306 62.1
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 3.6e-105 385.6 297 64.3
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 3.6e-105 385.6 296 63.9
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 2.3e-104 382.9 289 65.4
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 1.5e-103 380.2 298 61.7
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.2e-102 376.3 305 60.0
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.7e-102 375.6 305 60.0
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 3.7e-102 375.6 296 62.8
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 4.9e-102 375.2 304 58.9
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 3.5e-100 369.0 302 59.6
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 6.0e-100 368.2 304 60.9
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.3e-99 366.3 305 59.0
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.3e-99 366.3 305 59.0
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 2.3e-99 366.3 307 61.2
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 4.3e-98 362.1 300 60.0
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.1e-96 355.9 286 61.2
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 7.8e-92 341.3 293 56.3
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 3.0e-91 339.3 286 58.7
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 8.7e-91 337.8 300 56.7
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 7.3e-90 334.7 301 54.2
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 1.2e-89 334.0 300 53.7
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 3.6e-89 332.4 300 54.0
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 3.6e-89 332.4 285 56.1
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 8.1e-89 331.3 300 53.3
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 1.1e-88 330.9 292 54.1
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 1.2e-87 327.4 294 54.4
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 1.2e-87 327.4 190 85.8
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.5e-87 327.0 192 84.9
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 2.0e-87 326.6 190 85.8
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 2.2e-86 323.2 279 57.3
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 2.9e-86 322.8 296 54.4
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.9e-86 322.8 253 62.1
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 1.1e-85 320.9 306 52.3
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 4.6e-84 315.5 271 58.7
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 1.0e-83 314.3 298 52.0
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.5e-82 309.7 254 59.8
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 5.6e-82 308.5 299 51.5
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 1.3e-81 307.4 301 51.2
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 2.1e-81 306.6 286 54.2
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 1.8e-80 303.5 285 53.3
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 4.0e-80 302.4 226 69.5
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.0e-79 300.1 286 53.8
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 4.5e-79 298.9 286 53.8
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 5.8e-79 298.5 278 54.3
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.4e-77 293.9 280 54.3
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 4.2e-77 292.4 237 65.0
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 5.4e-77 292.0 302 51.7
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.1e-74 284.3 269 55.8
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 4.3e-74 282.3 284 51.4
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 1.4e-72 277.3 290 50.0
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 1.4e-72 277.3 296 50.0
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 3.1e-72 276.2 266 53.4
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 2.0e-71 273.5 228 60.1
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 6.4e-70 268.5 350 46.9
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.6e-65 253.8 199 61.3
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 2.4e-64 250.0 313 47.0
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 4.0e-64 249.2 278 46.8
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 3.4e-63 246.1 191 64.9
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.3e-62 244.2 278 46.0
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 1.3e-62 244.2 276 46.4
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 6.5e-62 241.9 246 48.8
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.6e-57 227.3 229 53.7
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.7e-49 200.7 170 60.6
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 2.7e-44 183.3 150 62.0
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 1.4e-35 154.5 193 46.6
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 6.6e-14 82.4 138 42.0


User provided reference genes

Program Settings