Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 3.6e-288 994.2 489 100.0
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.5e-249 865.9 490 87.1
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.5e-225 785.4 462 81.8
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.0e-222 775.8 474 79.5
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.9e-221 771.9 474 80.4
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.2e-220 768.5 474 78.3
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 7.6e-214 747.3 450 79.1
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.2e-213 745.7 480 75.8
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.2e-211 740.0 466 78.1
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 4.6e-211 738.0 468 76.5
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.7e-210 736.1 463 76.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.7e-210 736.1 447 78.3
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 5.1e-210 734.6 478 74.3
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 5.6e-209 731.1 447 78.1
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 2.8e-208 728.8 447 77.6
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 8.1e-208 727.2 448 77.7
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 8.1e-208 727.2 474 76.8
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 8.1e-208 727.2 447 77.6
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 3.1e-207 725.3 447 78.3
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 9.0e-207 723.8 489 72.4
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 9.0e-207 723.8 467 75.6
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.3e-205 719.9 474 73.0
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 6.4e-205 717.6 448 75.0
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.4e-204 716.5 448 75.0
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 2.4e-204 715.7 460 74.6
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.2e-204 714.9 466 76.0
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 5.4e-204 714.5 448 74.8
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 5.4e-204 714.5 442 75.3
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 4.6e-203 711.4 442 75.6
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 6.0e-203 711.1 451 75.6
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.3e-202 709.1 436 78.7
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 3.9e-202 708.4 459 75.2
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 5.1e-202 708.0 451 75.6
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 6.6e-202 707.6 459 76.3
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.1e-201 706.8 426 78.4
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.1e-201 706.8 426 78.4
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.1e-201 706.8 463 75.2
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.1e-201 706.8 460 75.9
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.1e-201 706.8 460 75.9
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.5e-201 705.7 451 75.2
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.3e-201 705.3 477 73.2
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 3.3e-201 705.3 476 73.1
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 2.1e-200 702.6 462 72.9
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 2.1e-200 702.6 449 73.9
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 4.8e-200 701.4 460 73.9
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 4.8e-200 701.4 468 72.4
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 8.1e-200 700.7 455 74.7
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 5.3e-199 698.0 468 72.6
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 6.9e-199 697.6 446 75.1
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 6.9e-199 697.6 460 73.7
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 9.0e-199 697.2 461 74.4
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 7.6e-198 694.1 452 73.0
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.3e-197 693.3 466 73.0
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 1.9e-196 689.5 449 73.5
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 1.9e-196 689.5 461 72.7
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.4e-196 689.1 452 71.7
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 4.2e-196 688.3 450 74.2
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 7.1e-196 687.6 446 74.0
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 7.1e-196 687.6 439 74.7
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.1e-195 686.0 452 73.2
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 2.1e-195 686.0 445 73.0
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 4.6e-195 684.9 475 69.7
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 6.0e-195 684.5 450 72.4
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.3e-194 683.3 455 72.7
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 2.3e-194 682.6 439 73.6
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 5.1e-194 681.4 436 74.5
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 5.1e-194 681.4 434 74.4
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 8.7e-194 680.6 446 73.8
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.5e-193 679.9 451 73.4
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.5e-193 679.9 451 73.4
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 1.9e-193 679.5 451 72.7
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 4.3e-193 678.3 447 72.9
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.3e-193 678.3 444 74.3
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 7.4e-193 677.6 462 70.8
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 7.4e-193 677.6 475 68.6
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 7.4e-193 677.6 472 70.8
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 7.4e-193 677.6 452 72.1
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 9.6e-193 677.2 461 72.2
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 9.6e-193 677.2 446 73.3
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.3e-192 676.8 445 72.6
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.1e-192 674.1 451 72.3
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.1e-192 674.1 451 72.3
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.8e-191 672.9 441 72.6
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 2.4e-191 672.5 429 73.9
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 2.4e-191 672.5 476 70.6
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 3.1e-191 672.2 441 72.8
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 3.1e-191 672.2 451 71.8
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 3.1e-191 672.2 460 70.9
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 6.9e-191 671.0 451 70.7
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 9.0e-191 670.6 441 72.6
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.2e-190 670.2 455 72.3
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.2e-190 670.2 433 74.4
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.2e-190 670.2 448 72.3
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 1.5e-190 669.8 430 73.0
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 2.0e-190 669.5 430 72.8
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 2.0e-190 669.5 434 74.2
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.6e-190 669.1 455 72.3
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 3.4e-190 668.7 434 73.5
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.0e-189 667.2 431 72.6
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.0e-189 667.2 425 73.9
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.0e-189 667.2 425 73.9
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.3e-189 666.8 451 72.1
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 4.9e-189 664.8 439 71.1
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 1.2e-187 660.2 429 72.0
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 4.6e-187 658.3 436 71.6
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 7.9e-187 657.5 406 77.1
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.0e-186 657.1 436 71.6
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.8e-186 656.4 424 72.6
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 1.8e-186 656.4 452 70.1
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 1.8e-186 656.4 452 70.1
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 6.7e-186 654.4 439 72.0
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 6.7e-186 654.4 409 75.6
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 6.7e-186 654.4 457 68.5
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 6.7e-186 654.4 445 70.6
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.5e-185 653.3 388 80.2
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 3.3e-185 652.1 458 69.4
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 5.7e-185 651.4 452 69.9
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 7.4e-185 651.0 446 70.9
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 9.6e-185 650.6 453 70.2
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 9.6e-185 650.6 462 69.5
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 2.1e-184 649.4 452 68.6
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 4.8e-184 648.3 457 69.4
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 4.8e-184 648.3 446 70.2
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 2.4e-183 646.0 430 73.0
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.1e-183 645.2 445 69.4
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 5.3e-183 644.8 450 69.6
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 9.0e-183 644.0 448 69.9
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.2e-182 643.7 450 71.1
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 3.4e-182 642.1 432 72.2
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 3.4e-182 642.1 418 74.9
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 5.0e-181 638.3 474 70.3
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.1e-180 637.1 459 67.5
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 1.1e-180 637.1 452 69.5
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.9e-180 636.3 406 74.9
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 5.5e-180 634.8 406 74.4
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 5.5e-180 634.8 445 69.0
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 7.9e-179 630.9 445 69.7
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.1e-177 627.1 445 69.0
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.1e-177 627.1 444 67.6
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.9e-172 609.8 364 77.7
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.8e-170 603.2 382 75.1
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 2.3e-170 602.8 384 74.2
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.3e-168 597.0 364 78.6
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.2e-168 596.3 483 64.6
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 3.5e-158 562.4 387 70.3
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.9e-158 561.6 443 64.3
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.2e-155 553.9 449 62.8
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.8e-152 542.7 449 60.8
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.8e-149 532.3 418 62.7
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 4.0e-138 495.7 419 58.0
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 2.6e-121 439.9 313 66.8
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 2.3e-117 426.8 284 71.5
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-109 401.0 273 69.6
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.6e-107 394.0 437 48.5
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 9.6e-100 368.2 240 71.7
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.6e-99 367.5 452 44.2
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.8e-98 364.0 422 47.2
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 1.4e-95 354.4 231 72.3
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 3.0e-93 346.7 383 48.0
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 1.6e-75 287.7 162 85.8
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 8.1e-75 285.4 272 58.1
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 7.7e-57 225.7 160 71.9
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.5e-47 193.0 113 78.8
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.3e-44 183.7 126 69.0
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.8e-42 177.9 445 31.2
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.5e-39 168.3 95 81.1
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 3.1e-34 150.6 453 28.9
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 2.8e-22 110.9 95 55.8
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 3.0e-21 107.5 72 68.1
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.1e-14 84.7 60 65.0
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 2.1e-14 84.7 79 57.0
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 9.5e-07 59.3 43 67.4
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.1e-06 58.2 43 65.1


User provided reference genes

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