Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G317400 Theobroma cacao HOM05D009814 ORTHO05D004310 6.6e-100 367.9 258 100.0
Duzib138G1730 Durio zibethinus HOM05D009814 ORTHO05D004310 2.6e-72 276.2 239 86.6
Gohir.D08G141000 Gossypium hirsutum HOM05D009814 ORTHO05D004310 5.1e-68 261.9 260 78.5
Gorai.004G145000 Gossypium raimondii HOM05D009814 ORTHO05D004310 1.6e-66 256.9 260 77.7
Gohir.A08G120000 Gossypium hirsutum HOM05D009814 ORTHO05D004310 2.8e-66 256.1 260 76.2
COL.COLO4_23198 Corchorus olitorius HOM05D009814 ORTHO05D004310 1.7e-63 246.9 231 81.4
Duzib211G0633 Durio zibethinus HOM05D009814 ORTHO05D004310 6.4e-63 245.0 239 75.7
Gohir.A11G108100 Gossypium hirsutum HOM05D009814 ORTHO05D004310 6.0e-61 238.4 239 77.8
Gorai.007G121100 Gossypium raimondii HOM05D009814 ORTHO05D004310 1.3e-44 184.1 216 74.5
Ciclev10021807m.g Citrus clementina HOM05D009814 ORTHO05D004310 2.9e-31 139.8 227 62.6
Cpa.g.sc18.87 Carica papaya HOM05D009814 ORTHO05D004310 5.5e-30 135.6 242 61.6
Dinv10123 Davidia involucrata HOM05D009814 ORTHO05D004310 1.5e-27 127.5 239 59.4
TAR365G0785 Trochodendron aralioides HOM05D007634 ORTHO05D004310 7.4e-27 125.2 220 63.2
GSVIVG01028151001 Vitis vinifera HOM05D009814 ORTHO05D004310 2.2e-26 123.6 243 60.9
TAR362G0031 Trochodendron aralioides HOM05D007634 ORTHO05D004310 1.1e-25 121.3 220 59.1
Atru.chr5.960 Acer truncatum HOM05D009814 ORTHO05D004310 5.3e-25 119.0 227 63.4
QL12p018988 Quercus lobata HOM05D009154 ORTHO05D004310 2.9e-23 113.2 214 43.5
Manes.05G013000 Manihot esculenta HOM05D009154 ORTHO05D004310 6.5e-23 112.1 220 39.5
Hma1.2p1_0408F.1_g146500 Hydrangea macrophylla HOM05D009814 ORTHO05D004310 5.2e-20 102.4 241 57.7
Prupe.3G008100 Prunus persica HOM05D018099 ORTHO05D020712 2.8e-18 96.7 214 38.3
TWI18G0583 Tripterygium wilfordii HOM05D009814 ORTHO05D004310 2.8e-18 96.7 233 49.8
EL10As5g23572 Beta vulgaris HOM05D009154 ORTHO05D004310 4.8e-18 95.9 233 49.4
TAR636G1196 Trochodendron aralioides HOM05D007634 ORTHO05D004310 4.8e-18 95.9 116 49.1
MBI18_g35543_MAGBIO Magnolia biondii HOM05D007634 ORTHO05D004310 3.1e-17 93.2 232 57.3
Lj1C14T15 Lonicera japonica HOM05D009154 ORTHO05D004310 2.7e-16 90.1 245 30.6
Sc17g0000300 Simmondsia chinensis HOM05D009814 ORTHO05D004310 2.7e-16 90.1 214 55.1
TWI36G1520 Tripterygium wilfordii HOM05D009814 ORTHO05D004310 4.5e-16 89.4 256 48.4
Prupe.1G113900 Prunus persica HOM05D007634 ORTHO05D004310 5.9e-16 89.0 240 53.3
Sabra14G0087500 Salix brachista HOM05D009154 ORTHO05D004310 5.9e-16 89.0 263 29.7
MD09G1285700 Malus domestica HOM05D018099 ORTHO05D020712 1.7e-15 87.4 215 45.1
CSS0049163 Camellia sinensis var. sinensis HOM05D007634 ORTHO05D004310 1.9e-14 84.0 244 51.2
Potri.002G192700 Populus trichocarpa HOM05D009814 ORTHO05D004310 3.2e-14 83.2 116 44.0
AUR62011764 Chenopodium quinoa HOM05D009154 ORTHO05D004310 4.2e-14 82.8 221 35.7
GSVIVG01031256001 Vitis vinifera HOM05D007634 ORTHO05D004310 4.2e-14 82.8 227 41.9
MD16G1150300 Malus domestica HOM05D007634 ORTHO05D004310 5.5e-14 82.4 238 52.5
Sed0022617 Sechium edule HOM05D009154 ORTHO05D004310 7.2e-14 82.0 227 35.7
Nn4g25534 Nelumbo nucifera HOM05D009814 ORTHO05D004310 2.1e-13 80.5 220 56.8
Haze_01332 Corylus avellana HOM05D007634 ORTHO05D004310 4.7e-13 79.3 245 48.6
Haze_01337 Corylus avellana HOM05D007634 ORTHO05D004310 4.7e-13 79.3 244 48.4
MELO3C015909.2 Cucumis melo HOM05D009154 ORTHO05D004310 4.7e-13 79.3 233 34.3
CsaV3_7G030120 Cucumis sativus L. HOM05D009154 ORTHO05D004310 6.1e-13 79.0 227 40.5
Sed0013714 Sechium edule HOM05D009154 ORTHO05D004310 6.1e-13 79.0 231 32.9
PSO761G0298 Papaver somniferum HOM05D058645 ORTHO05D004310 1.0e-12 78.2 223 53.4
Medtr1g086670 Medicago truncatula HOM05D012173 ORTHO05D004310 1.4e-12 77.8 228 35.1
Nn3g21763 Nelumbo nucifera HOM05D007634 ORTHO05D004310 1.4e-12 77.8 186 60.2
Aqoxy5G02697 Aquilegia oxysepala HOM05D009154 ORTHO05D004310 1.8e-12 77.4 242 34.7
Cfa015285 Carpinus fangiana HOM05D007634 ORTHO05D004310 2.3e-12 77.0 245 47.3
Sabra02G0163200 Salix brachista HOM05D009814 ORTHO05D004310 4.0e-12 76.3 116 41.4
Glyma.02G010700 Glycine max HOM05D012173 ORTHO05D004310 5.2e-12 75.9 232 45.3
Aqoxy2G02664 Aquilegia oxysepala HOM05D007634 ORTHO05D004310 8.8e-12 75.1 238 49.2
Sed0019931 Sechium edule HOM05D009154 ORTHO05D004310 8.8e-12 75.1 231 32.9
MELO3C012929.2 Cucumis melo HOM05D009154 ORTHO05D004310 1.5e-11 74.3 262 29.4
ClCG09G004940 Citrullus lanatus HOM05D009154 ORTHO05D004310 2.0e-11 73.9 235 30.6
Glyma.10G011100 Glycine max HOM05D012173 ORTHO05D004310 2.6e-11 73.6 233 49.8
GSVIVG01034962001 Vitis vinifera HOM05D007634 ORTHO05D004310 2.6e-11 73.6 254 42.5
CsaV3_3G026560 Cucumis sativus L. HOM05D009154 ORTHO05D004310 4.4e-11 72.8 236 30.9
FAN07G0504 Fragaria x ananassa HOM05D007634 ORTHO05D004310 4.4e-11 72.8 241 48.5
Dinv44263 Davidia involucrata HOM05D007634 ORTHO05D004310 5.7e-11 72.4 200 54.0
PSO210G0186 Papaver somniferum HOM05D058645 ORTHO05D004310 5.7e-11 72.4 220 53.2
QL06p012814 Quercus lobata HOM05D007634 ORTHO05D004310 5.7e-11 72.4 243 52.3
Lalb_Chr06g0166981 Lupinus albus HOM05D012173 ORTHO05D004310 7.5e-11 72.0 238 39.5
Hund16457 Selenicereus undatus HOM05D009154 ORTHO05D004310 7.5e-11 72.0 222 33.8
DCAR_002881 Daucus carota HOM05D009154 ORTHO05D004310 9.8e-11 71.6 228 49.6
FAN12G0129 Fragaria x ananassa HOM05D007634 ORTHO05D004310 1.3e-10 71.2 240 48.3
AUR62024610 Chenopodium quinoa HOM05D009154 ORTHO05D004310 1.7e-10 70.9 226 34.1
Eucgr.K03556 Eucalyptus grandis HOM05D009154 ORTHO05D004310 1.7e-10 70.9 221 45.2
RcHm_v2.0_Chr4g0425851 Rosa chinensis HOM05D007634 ORTHO05D004310 2.2e-10 70.5 240 48.3
Aqoxy6G01340 Aquilegia oxysepala HOM05D009814 ORTHO05D004310 4.8e-10 69.3 110 47.3
CiPaw.02G072900 Carya illinoinensis HOM05D007634 ORTHO05D004310 8.3e-10 68.6 251 50.2
FvH4_4g20190 Fragaria vesca HOM05D007634 ORTHO05D004310 1.1e-09 68.2 240 47.9
MD13G1149900 Malus domestica HOM05D007634 ORTHO05D004310 1.4e-09 67.8 238 48.7
CSS0049682 Camellia sinensis var. sinensis HOM05D007634 ORTHO05D004310 4.1e-09 66.2 220 45.0
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 5.4e-09 65.9 238 50.4
TWI09G0962 Tripterygium wilfordii HOM05D007634 ORTHO05D004310 5.4e-09 65.9 239 46.9
Potri.014G118000 Populus trichocarpa HOM05D009814 ORTHO05D004310 7.0e-09 65.5 106 34.0
PGR044G0657 Punica granatum HOM05D009154 ORTHO05D004310 9.1e-09 65.1 221 39.4
ClCG10G011600 Citrullus lanatus HOM05D009154 ORTHO05D004310 2.0e-08 63.9 237 27.4
Ca_10269_v3 Cicer arietinum L. HOM05D012173 ORTHO05D004310 2.7e-08 63.5 247 50.2
Sed0003021 Sechium edule HOM05D009154 ORTHO05D004310 5.9e-08 62.4 234 37.6
Lj6A693T64 Lonicera japonica HOM05D007634 ORTHO05D004310 1.0e-07 61.6 239 40.2
Lj5g0021212 Lotus japonicus HOM05D012173 ORTHO05D004310 1.0e-07 61.6 219 53.0
Sabra10G0114400 Salix brachista HOM05D007634 ORTHO05D004310 1.3e-07 61.2 229 48.9
CiPaw.07G030700 Carya illinoinensis HOM05D013055 ORTHO05D014149 1.7e-07 60.8 119 37.0
Potri.010G148200 Populus trichocarpa HOM05D007634 ORTHO05D004310 1.7e-07 60.8 228 48.7
MD17G1278300 Malus domestica HOM05D018099 ORTHO05D020712 2.2e-07 60.5 107 35.5
DCAR_005743 Daucus carota HOM05D009154 ORTHO05D004310 8.5e-07 58.5 234 36.8
CiPaw.01G136100 Carya illinoinensis HOM05D007634 ORTHO05D004310 1.1e-06 58.2 224 49.1
CDE02G3511 Ceratophyllum demersum HOM05D063264 ORTHO05D004310 1.1e-06 58.2 222 49.5
Rhsim06G0057500 Rhododendron simsii HOM05D009814 ORTHO05D004310 1.1e-06 58.2 223 48.0
Cfa006724 Carpinus fangiana HOM05D013055 ORTHO05D014149 2.5e-06 57.0 116 35.3
Dinv15141 Davidia involucrata HOM05D007634 ORTHO05D004310 2.5e-06 57.0 115 39.1
Hma1.2p1_0078F.1_g039860 Hydrangea macrophylla HOM05D007634 ORTHO05D004310 2.5e-06 57.0 218 49.1
Hma1.2p1_1400F.1_g280910 Hydrangea macrophylla HOM05D007634 ORTHO05D004310 3.2e-06 56.6 218 49.1
Lj3A834G63 Lonicera japonica HOM05D007634 ORTHO05D004310 3.2e-06 56.6 240 35.8
Oeu038043.2 Olea europaea HOM05D016587 ORTHO05D019830 3.2e-06 56.6 233 47.2
Ah.11g049040 Amaranthus hybridus HOM05D009154 ORTHO05D004310 4.2e-06 56.2 221 29.9
Hma1.2p1_3252F.1_g334510 Hydrangea macrophylla HOM05D009814 ORTHO05D004310 4.2e-06 56.2 79 43.0
Potri.008G102700 Populus trichocarpa HOM05D007634 ORTHO05D004310 5.5e-06 55.8 223 47.5
Actinidia25864 Actinidia chinensis HOM05D009814 ORTHO05D004310 9.4e-06 55.1 110 36.4
DCAR_026994 Daucus carota HOM05D007634 ORTHO05D004310 9.4e-06 55.1 218 37.2


User provided reference genes

Program Settings