Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 3.1e-38 161.4 86 100.0
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 2.2e-28 128.6 89 82.0
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 6.5e-28 127.1 87 80.5
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 6.5e-28 127.1 87 80.5
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 2.5e-27 125.2 87 79.3
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 1.6e-26 122.5 87 75.9
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 2.3e-25 118.6 82 74.4
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 8.3e-23 110.2 94 67.0
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 3.1e-22 108.2 85 70.6
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 5.9e-21 104.0 85 68.2
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 5.9e-21 104.0 83 62.7
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 5.9e-21 104.0 83 65.1
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 7.7e-21 103.6 80 71.2
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 1.0e-20 103.2 79 70.9
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 1.3e-20 102.8 81 64.2
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 1.3e-20 102.8 85 68.2
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 2.2e-20 102.1 83 61.4
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 2.2e-20 102.1 88 62.5
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 8.5e-20 100.1 79 70.9
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 1.1e-19 99.8 79 69.6
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 1.9e-19 99.0 86 64.0
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 3.2e-19 98.2 83 60.2
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 3.2e-19 98.2 83 65.1
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 4.2e-19 97.8 85 62.4
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 4.2e-19 97.8 83 59.0
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 5.5e-19 97.4 83 61.4
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 5.5e-19 97.4 80 67.5
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 7.2e-19 97.1 85 62.4
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 7.2e-19 97.1 84 63.1
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 9.4e-19 96.7 80 66.2
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 9.4e-19 96.7 83 65.1
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 9.4e-19 96.7 77 68.8
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 1.2e-18 96.3 79 67.1
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 1.2e-18 96.3 81 65.4
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 2.1e-18 95.5 79 67.1
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 2.7e-18 95.1 83 63.9
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 2.7e-18 95.1 89 60.7
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 2.7e-18 95.1 92 60.9
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 3.6e-18 94.7 83 62.7
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 3.6e-18 94.7 83 61.4
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 3.6e-18 94.7 77 67.5
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 6.1e-18 94.0 79 64.6
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 1.0e-17 93.2 83 62.7
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 1.4e-17 92.8 79 64.6
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 3.0e-17 91.7 86 59.3
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 5.2e-17 90.9 77 66.2
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 8.8e-17 90.1 74 67.6
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 2.6e-16 88.6 84 60.7
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 3.4e-16 88.2 82 61.0
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 4.4e-16 87.8 81 61.7
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 4.4e-16 87.8 78 62.8
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 7.5e-16 87.0 84 60.7
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 7.5e-16 87.0 84 60.7
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 9.8e-16 86.7 64 75.0
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 1.7e-15 85.9 84 59.5
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.7e-15 85.9 84 59.5
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 2.2e-15 85.5 77 61.0
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 2.2e-15 85.5 81 56.8
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 2.8e-15 85.1 72 65.3
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 4.8e-15 84.3 73 60.3
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 6.3e-15 84.0 81 58.0
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 6.3e-15 84.0 75 62.7
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 6.3e-15 84.0 78 62.8
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 8.3e-15 83.6 84 54.8
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 1.1e-14 83.2 77 59.7
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 2.4e-14 82.0 76 61.8
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 2.4e-14 82.0 75 62.7
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 4.1e-14 81.3 78 56.4
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 7.0e-14 80.5 79 59.5
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 9.1e-14 80.1 80 60.0
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 1.2e-13 79.7 77 59.7
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 1.2e-13 79.7 79 55.7
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 2.7e-13 78.6 81 56.8
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 1.0e-12 76.6 79 54.4
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 1.0e-12 76.6 85 54.1
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 2.3e-12 75.5 85 49.4
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 2.9e-12 75.1 84 58.3
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 2.9e-12 75.1 82 48.8
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 3.8e-12 74.7 78 57.7
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 8.6e-12 73.6 78 56.4
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 1.1e-11 73.2 58 62.1
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 5.5e-11 70.9 78 53.8
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 5.5e-11 70.9 79 51.9
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 7.2e-11 70.5 81 49.4
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 9.5e-11 70.1 74 54.1
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 1.2e-10 69.7 77 55.8
ATR0807G116 Amborella trichopoda HOM05D007627 ORTHO05D009640 1.8e-09 65.9 77 51.9
SHI28956 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-09 65.5 61 54.1
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 6.8e-09 63.9 57 64.9
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 7.5e-08 60.5 81 45.7
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 7.5e-08 60.5 81 46.9
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 9.8e-08 60.1 79 48.1
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 3.7e-07 58.2 82 46.3
CDE04G1409 Ceratophyllum demersum HOM05D000443 ORTHO05D001066 1.8e-06 55.8 82 46.3
ATR0414G001 Amborella trichopoda HOM05D007627 ORTHO05D009640 2.4e-06 55.5 59 47.5
Carub.0001s3693 Capsella rubella HOM05D007627 ORTHO05D009640 5.4e-06 54.3 81 43.2
Carub.0001s3680 Capsella rubella HOM05D007627 ORTHO05D009640 9.2e-06 53.5 83 43.4


User provided reference genes

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