Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 4.5e-56 221.1 116 100.0
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 2.0e-27 125.9 111 61.3
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 5.7e-27 124.4 111 61.3
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 1.3e-26 123.2 109 60.6
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 6.3e-26 120.9 111 59.5
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 2.9e-23 112.1 104 60.6
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 2.9e-23 112.1 104 60.6
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 8.5e-23 110.5 113 54.0
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 2.5e-22 109.0 105 54.3
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 1.6e-21 106.3 108 53.7
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 2.1e-21 105.9 111 54.1
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 2.1e-21 105.9 113 50.4
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 3.6e-21 105.1 105 55.2
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 8.0e-21 104.0 104 55.8
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 6.8e-20 100.9 105 51.4
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 4.4e-19 98.2 109 51.4
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 3.7e-18 95.1 107 48.6
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 1.8e-17 92.8 104 49.0
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 3.1e-17 92.0 94 52.1
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 2.7e-16 89.0 104 48.1
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 4.5e-16 88.2 108 50.0
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 5.9e-16 87.8 111 49.5
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 7.7e-16 87.4 110 44.5
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 1.0e-15 87.0 111 45.0
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 8.5e-15 84.0 105 47.6
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.1e-14 83.6 99 49.5
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.1e-14 83.6 109 45.0
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.1e-14 83.6 109 45.0
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 5.5e-14 81.3 101 47.5
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 1.2e-13 80.1 118 39.0
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 1.6e-13 79.7 104 40.4
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 3.0e-12 75.5 113 38.1
Aqoxy3G01114 Aquilegia oxysepala HOM05D008757 ORTHO05D010583 1.2e-11 73.6 96 43.8
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 1.5e-11 73.2 109 40.4
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 2.6e-11 72.4 73 49.3
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 9.8e-11 70.5 81 44.4
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 2.2e-10 69.3 102 41.2
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 1.8e-09 66.2 76 42.1
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 2.4e-09 65.9 111 39.6
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 4.1e-09 65.1 71 45.1
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 4.1e-09 65.1 76 40.8
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 5.4e-09 64.7 110 36.4
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 7.0e-09 64.3 111 35.1
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 9.1e-09 63.9 76 40.8
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 1.6e-08 63.2 76 39.5
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 2.7e-08 62.4 76 39.5
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 2.7e-08 62.4 76 39.5
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 2.7e-08 62.4 111 34.2
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 2.9e-07 58.9 76 38.2
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 2.9e-07 58.9 112 37.5
A05p34600 Brassica napus HOM05D012658 ORTHO05D010583 1.5e-06 56.6 78 39.7


User provided reference genes

Program Settings