Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 1.6e-115 419.5 214 100.0
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 4.3e-105 384.8 214 89.3
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.2e-101 372.5 211 86.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 4.9e-101 371.3 208 87.5
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.2e-100 368.6 209 87.1
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 7.1e-100 367.5 209 86.6
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.0e-99 364.4 207 85.5
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 7.9e-99 364.0 208 85.6
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.3e-96 354.4 205 86.3
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 6.9e-87 324.3 207 77.3
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-86 322.8 212 73.1
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-85 320.1 212 72.6
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.2e-85 319.3 212 72.6
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 5.0e-85 318.2 212 71.7
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 6.5e-85 317.8 209 72.7
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 6.5e-85 317.8 210 73.8
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 8.5e-85 317.4 212 72.6
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.1e-84 317.0 209 74.6
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 2.5e-84 315.8 210 72.4
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 2.5e-84 315.8 212 71.7
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.4e-84 313.9 212 72.6
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.6e-83 313.2 214 71.5
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.6e-83 313.2 208 72.6
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 2.1e-83 312.8 210 72.4
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 2.7e-83 312.4 211 73.0
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 3.6e-83 312.0 211 73.0
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 3.6e-83 312.0 209 72.7
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 7.9e-83 310.8 208 72.6
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.3e-82 309.3 209 74.2
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 3.0e-82 308.9 214 71.0
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.5e-81 306.6 210 70.5
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 2.0e-81 306.2 214 69.2
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 3.3e-81 305.4 210 70.5
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.3e-81 305.4 212 70.3
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.3e-81 305.1 210 72.4
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 4.3e-81 305.1 210 70.5
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.7e-80 303.1 209 70.3
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 2.2e-80 302.8 214 70.1
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 2.8e-80 302.4 210 69.0
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.7e-80 302.0 209 69.4
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 6.3e-80 301.2 209 68.9
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 6.3e-80 301.2 210 68.1
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.1e-79 300.4 214 69.2
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 4.1e-79 298.5 209 68.4
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.1e-79 298.5 210 69.5
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 5.3e-79 298.1 214 65.4
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 6.9e-79 297.7 214 66.4
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.0e-78 296.2 209 69.4
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 2.0e-78 296.2 210 68.1
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.0e-78 296.2 214 65.4
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 2.0e-78 296.2 209 67.9
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 3.4e-78 295.4 210 68.6
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 4.5e-78 295.0 211 67.3
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 4.5e-78 295.0 212 66.5
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.9e-78 294.7 209 68.4
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 5.9e-78 294.7 208 67.8
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 5.9e-78 294.7 209 68.4
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 7.7e-78 294.3 208 67.8
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 7.7e-78 294.3 210 67.6
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 7.7e-78 294.3 199 70.9
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 1.0e-77 293.9 208 68.8
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.0e-77 293.9 210 67.1
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.0e-77 293.9 208 70.2
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.7e-77 293.1 208 66.3
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.9e-77 292.4 208 66.8
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 3.8e-77 292.0 210 69.5
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 5.0e-77 291.6 213 66.2
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 6.5e-77 291.2 197 72.1
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 8.5e-77 290.8 210 68.6
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.1e-76 290.4 209 67.5
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.1e-76 290.4 214 63.1
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.1e-76 290.4 210 67.1
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.4e-76 290.0 211 65.4
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.9e-76 289.7 208 65.9
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.9e-76 289.7 244 61.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 3.2e-76 288.9 210 65.2
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 4.2e-76 288.5 207 65.2
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 7.2e-76 287.7 211 64.0
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 7.2e-76 287.7 208 65.9
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 9.4e-76 287.3 208 65.4
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.6e-75 286.6 210 65.2
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 2.1e-75 286.2 209 67.0
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.1e-75 286.2 208 65.4
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 2.7e-75 285.8 209 64.6
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 2.7e-75 285.8 210 64.3
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.9e-75 284.3 183 74.3
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.0e-74 283.9 211 65.4
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.8e-74 283.1 209 66.5
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 3.0e-74 282.3 208 66.8
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.0e-74 282.3 209 66.0
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 3.0e-74 282.3 193 71.5
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 3.9e-74 282.0 211 63.0
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 3.9e-74 282.0 211 63.0
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 6.7e-74 281.2 210 65.7
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 8.8e-74 280.8 204 65.2
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 1.1e-73 280.4 208 66.8
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.5e-73 280.0 208 63.9
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 1.5e-73 280.0 204 63.7
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.0e-73 279.6 209 66.0
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 2.6e-73 279.3 208 67.3
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 4.4e-73 278.5 209 66.5
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 7.4e-73 277.7 211 64.0
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 7.4e-73 277.7 209 65.1
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 7.4e-73 277.7 204 64.2
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 9.7e-73 277.3 209 66.5
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 9.7e-73 277.3 209 65.6
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.3e-72 276.9 209 66.0
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.3e-72 276.9 209 66.5
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.8e-72 275.8 195 69.2
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.3e-72 274.6 196 67.3
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.1e-71 273.9 209 65.6
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.8e-71 273.1 204 62.7
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.1e-71 272.3 205 62.9
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 7.0e-71 271.2 208 62.0
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.6e-70 270.0 207 64.7
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.6e-70 270.0 206 66.5
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.7e-70 267.7 212 62.7
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 6.5e-69 264.6 210 59.0
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 9.4e-68 260.8 212 62.3
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 5.2e-66 255.0 210 57.6
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 8.8e-66 254.2 177 68.9
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.5e-65 253.4 181 69.1
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 4.4e-65 251.9 202 63.4
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 2.2e-64 249.6 185 67.6
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.8e-64 249.2 201 60.7
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 5.9e-62 241.5 210 60.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 2.9e-61 239.2 208 58.2
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.0e-58 230.7 206 55.3
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 8.3e-56 221.1 176 63.1
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.7e-51 206.1 219 51.6
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 8.0e-51 204.5 195 52.8
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.5e-49 200.3 141 67.4
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 1.5e-49 200.3 201 51.7
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.5e-49 200.3 128 74.2
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.7e-48 196.8 205 49.3
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.1e-47 194.1 205 49.8
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 7.7e-46 188.0 114 79.8
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 1.0e-45 187.6 135 64.4
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.5e-44 183.0 125 71.2
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 4.3e-44 182.2 194 50.5
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 2.8e-43 179.5 143 62.2
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 8.9e-42 174.5 134 66.4
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 3.4e-41 172.6 144 55.6
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 7.5e-41 171.4 140 60.7
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 8.3e-40 167.9 119 68.9
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 9.2e-39 164.5 105 76.2
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 6.6e-37 158.3 185 43.8
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 7.3e-36 154.8 125 63.2
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.0e-34 151.0 113 63.7
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.9e-31 140.2 88 76.1
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 5.4e-31 138.7 119 55.5
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.3e-29 134.0 172 41.9
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-29 134.0 118 58.5
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 9.5e-28 127.9 94 63.8
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 3.6e-27 125.9 90 67.8
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 4.7e-27 125.6 108 56.5
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 8.3e-24 114.8 69 76.8
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 7.8e-22 108.2 75 72.0
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 6.6e-21 105.1 175 34.9
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.1e-20 104.4 96 54.2
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-20 103.6 120 49.2
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 3.6e-19 99.4 90 57.8
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 4.7e-19 99.0 66 66.7
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 8.1e-19 98.2 85 56.5
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.2e-17 94.4 63 69.8
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.5e-17 94.0 78 60.3
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 5.8e-17 92.0 61 67.2
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 7.6e-17 91.7 83 57.8
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 1.9e-15 87.0 51 82.4
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 2.7e-14 83.2 66 59.1
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 4.6e-14 82.4 63 65.1
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 4.6e-14 82.4 174 30.5
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.9e-13 79.3 66 56.1
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 8.6e-13 78.2 76 55.3
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 8.6e-13 78.2 68 55.9
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 4.3e-12 75.9 60 58.3
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 4.3e-12 75.9 60 56.7
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 5.6e-12 75.5 57 64.9
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 5.2e-10 68.9 49 65.3
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 2.0e-09 67.0 194 25.8
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.4e-09 66.2 66 48.5
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.4e-07 60.8 66 50.0


User provided reference genes

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