Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 9.5e-83 310.1 151 100.0
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 4.5e-48 194.9 176 61.9
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 2.7e-45 185.7 176 58.5
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 6.5e-39 164.5 176 52.3
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 8.5e-39 164.1 176 52.3
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 8.5e-39 164.1 176 51.7
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 1.9e-38 162.9 162 57.4
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 9.3e-38 160.6 133 62.4
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 1.6e-37 159.8 132 62.9
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 2.1e-37 159.5 175 50.9
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 3.6e-37 158.7 176 50.6
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 7.9e-37 157.5 174 49.4
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 7.9e-37 157.5 139 60.4
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 1.8e-36 156.4 176 48.3
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 1.8e-36 156.4 176 47.2
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 2.3e-36 156.0 133 61.7
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 5.7e-35 151.4 168 51.2
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 9.7e-35 150.6 171 46.2
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 1.3e-34 150.2 133 58.6
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 1.3e-34 150.2 177 45.8
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 1.6e-34 149.8 135 57.0
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 2.2e-34 149.4 176 46.0
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 2.8e-34 149.1 167 48.5
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 2.8e-34 149.1 176 47.7
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 3.7e-34 148.7 144 52.1
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 6.3e-34 147.9 176 48.3
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 6.3e-34 147.9 171 45.6
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 8.2e-34 147.5 133 56.4
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 8.2e-34 147.5 144 50.0
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.1e-33 147.1 176 46.6
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 1.1e-33 147.1 176 46.6
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 1.4e-33 146.7 169 50.9
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 1.8e-33 146.4 169 49.7
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 4.1e-33 145.2 144 52.1
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 4.1e-33 145.2 176 48.9
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 5.3e-33 144.8 133 56.4
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 6.9e-33 144.4 176 46.0
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 6.9e-33 144.4 176 44.9
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 6.9e-33 144.4 133 56.4
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 9.1e-33 144.1 133 55.6
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 9.1e-33 144.1 177 45.8
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 1.2e-32 143.7 130 56.9
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 1.2e-32 143.7 176 44.3
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 1.5e-32 143.3 176 45.5
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 2.0e-32 142.9 172 47.1
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 2.6e-32 142.5 132 55.3
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 3.4e-32 142.1 133 55.6
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 3.4e-32 142.1 133 55.6
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 3.4e-32 142.1 133 55.6
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 4.5e-32 141.7 133 54.1
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 5.9e-32 141.4 144 53.5
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 7.7e-32 141.0 168 47.6
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 1.0e-31 140.6 133 53.4
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 1.0e-31 140.6 133 56.4
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 1.3e-31 140.2 178 42.7
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 1.3e-31 140.2 178 42.7
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 1.3e-31 140.2 178 42.7
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 1.3e-31 140.2 178 42.7
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 1.3e-31 140.2 178 42.7
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 1.3e-31 140.2 133 54.9
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 1.7e-31 139.8 176 45.5
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 1.7e-31 139.8 176 44.9
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 1.7e-31 139.8 133 57.9
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 1.7e-31 139.8 176 43.8
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 2.2e-31 139.4 171 42.7
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 2.2e-31 139.4 173 48.0
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 2.2e-31 139.4 133 53.4
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 3.8e-31 138.7 133 55.6
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 5.0e-31 138.3 177 41.8
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 5.0e-31 138.3 167 46.7
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 5.0e-31 138.3 177 42.4
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 6.5e-31 137.9 134 53.7
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 6.5e-31 137.9 133 52.6
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 6.5e-31 137.9 176 46.0
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 8.5e-31 137.5 176 42.6
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 1.4e-30 136.7 130 53.8
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 1.9e-30 136.3 138 50.0
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 1.9e-30 136.3 176 43.2
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 1.9e-30 136.3 124 54.0
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 4.2e-30 135.2 137 54.7
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 4.2e-30 135.2 135 51.9
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 4.2e-30 135.2 176 43.8
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 5.5e-30 134.8 177 42.4
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 5.5e-30 134.8 177 42.4
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 5.5e-30 134.8 133 54.9
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 7.2e-30 134.4 130 52.3
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 1.2e-29 133.7 176 43.8
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.6e-29 133.3 170 42.4
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 1.6e-29 133.3 133 55.6
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 2.1e-29 132.9 176 44.3
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 2.1e-29 132.9 133 53.4
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 2.7e-29 132.5 130 52.3
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 2.7e-29 132.5 133 53.4
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 3.6e-29 132.1 176 43.8
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 6.1e-29 131.3 133 53.4
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 6.1e-29 131.3 141 46.1
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 1.4e-28 130.2 143 44.8
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.4e-28 130.2 133 52.6
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 2.3e-28 129.4 176 43.2
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 5.1e-28 128.3 133 52.6
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 2.0e-27 126.3 176 40.9
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 7.4e-27 124.4 176 41.5
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 7.4e-27 124.4 133 50.4
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 1.3e-26 123.6 143 44.1
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 1.3e-26 123.6 176 40.9
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 1.7e-26 123.2 133 51.1
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 1.7e-26 123.2 133 51.1
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 2.2e-26 122.9 122 50.8
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 5.3e-25 118.2 117 47.0
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 2.5e-22 109.4 141 40.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.2e-20 101.7 131 42.0
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 1.6e-16 90.1 109 49.5


User provided reference genes

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