Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 4.2e-77 291.2 138 100.0
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 3.8e-70 268.1 138 92.8
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 4.3e-66 254.6 138 89.9
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 4.3e-66 254.6 138 87.7
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 9.7e-66 253.4 138 87.7
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 2.2e-65 252.3 135 87.4
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 3.9e-59 231.5 136 78.7
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 4.4e-58 228.0 134 77.6
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 7.4e-58 227.3 136 77.9
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 3.7e-57 224.9 135 77.8
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 4.8e-57 224.6 138 73.9
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 6.3e-57 224.2 133 78.9
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 6.3e-57 224.2 136 73.5
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 8.2e-57 223.8 136 75.7
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.4e-56 223.0 138 76.1
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 1.8e-56 222.6 135 77.0
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.8e-56 222.6 135 77.0
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 3.1e-56 221.9 136 75.7
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 3.1e-56 221.9 138 77.5
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 7.0e-56 220.7 135 76.3
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 7.0e-56 220.7 136 74.3
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 9.1e-56 220.3 138 74.6
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 1.5e-55 219.5 136 73.5
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 2.6e-55 218.8 139 73.4
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 3.5e-55 218.4 136 72.1
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 4.5e-55 218.0 136 72.8
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 4.5e-55 218.0 136 72.1
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 5.9e-55 217.6 138 71.0
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 5.9e-55 217.6 131 77.9
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 7.7e-55 217.2 136 72.8
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 7.7e-55 217.2 137 74.5
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 1.0e-54 216.9 141 72.3
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.3e-54 216.5 133 72.9
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 2.2e-54 215.7 141 72.3
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 2.2e-54 215.7 132 76.5
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 2.9e-54 215.3 136 70.6
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 2.9e-54 215.3 138 72.5
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 5.0e-54 214.5 138 71.7
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 5.0e-54 214.5 137 72.3
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 6.5e-54 214.2 133 72.9
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 1.1e-53 213.4 138 71.7
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 1.1e-53 213.4 139 71.9
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 1.9e-53 212.6 137 72.3
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 1.9e-53 212.6 133 74.4
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 2.5e-53 212.2 136 70.6
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 3.2e-53 211.8 133 72.9
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 5.5e-53 211.1 136 72.1
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 9.4e-53 210.3 139 71.9
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 9.4e-53 210.3 135 71.1
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 9.4e-53 210.3 135 71.1
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 1.6e-52 209.5 136 68.4
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 2.7e-52 208.8 138 73.2
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 6.1e-52 207.6 138 72.5
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 6.1e-52 207.6 138 68.8
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 8.0e-52 207.2 138 72.5
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 8.0e-52 207.2 135 70.4
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 8.0e-52 207.2 136 67.6
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 1.0e-51 206.8 137 70.8
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 1.0e-51 206.8 137 70.8
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 1.0e-51 206.8 138 73.2
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 1.4e-51 206.5 138 68.8
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 1.8e-51 206.1 138 71.0
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 2.3e-51 205.7 133 69.2
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 3.0e-51 205.3 138 69.6
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 3.0e-51 205.3 136 68.4
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 3.9e-51 204.9 132 70.5
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 5.2e-51 204.5 140 70.7
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 1.1e-50 203.4 138 67.4
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 1.5e-50 203.0 138 66.7
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 1.5e-50 203.0 138 66.7
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 2.6e-50 202.2 135 66.7
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 3.3e-50 201.8 138 70.3
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 4.4e-50 201.4 138 65.9
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 5.7e-50 201.1 138 65.9
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 7.4e-50 200.7 138 71.0
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 7.4e-50 200.7 137 71.5
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 1.3e-49 199.9 139 69.1
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.7e-49 199.5 119 78.2
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 2.2e-49 199.1 139 66.2
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 2.8e-49 198.7 138 67.4
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 4.8e-49 198.0 119 77.3
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 1.1e-48 196.8 140 65.7
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 1.4e-48 196.4 140 66.4
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 1.8e-48 196.1 140 65.7
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 3.1e-48 195.3 135 68.9
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 4.1e-48 194.9 137 66.4
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 9.1e-48 193.7 140 65.0
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 1.2e-47 193.4 127 70.9
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 1.2e-47 193.4 127 70.9
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 4.5e-47 191.4 139 66.9
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 5.9e-47 191.0 119 71.4
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 7.7e-47 190.7 140 64.3
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 1.0e-46 190.3 140 64.3
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 1.3e-46 189.9 119 71.4
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 1.7e-46 189.5 139 64.7
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 2.9e-46 188.7 136 66.9
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 8.5e-46 187.2 105 79.0
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 1.5e-45 186.4 134 69.4
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 1.9e-45 186.0 124 71.8
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 2.5e-45 185.7 135 64.4
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 5.5e-45 184.5 124 71.8
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 7.2e-45 184.1 136 64.0
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 2.7e-44 182.2 134 64.2
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 1.8e-43 179.5 139 58.3
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 8.8e-43 177.2 116 72.4
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 2.6e-42 175.6 116 67.2
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 9.8e-42 173.7 130 64.6
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 1.7e-41 172.9 110 73.6
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 3.1e-40 168.7 139 59.7
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 5.4e-40 167.9 120 66.7
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 5.4e-40 167.9 136 59.6
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 5.4e-40 167.9 140 58.6
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 2.0e-39 166.0 108 71.3
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 1.8e-35 152.9 121 62.8
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 6.8e-35 151.0 121 59.5
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 8.8e-35 150.6 129 55.0
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 1.5e-34 149.8 119 58.8
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 9.8e-34 147.1 116 56.0
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 2.2e-33 146.0 125 51.2
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 2.2e-33 146.0 95 70.5
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 2.8e-33 145.6 118 54.2
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 8.3e-33 144.1 117 54.7
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 1.1e-32 143.7 115 56.5
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 2.4e-32 142.5 98 66.3
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 3.1e-32 142.1 92 69.6
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 2.8e-28 129.0 95 62.1
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 4.0e-27 125.2 86 65.1
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 7.5e-26 120.9 119 48.7
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 5.9e-23 111.3 89 59.6
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.0e-14 84.0 53 71.7
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 1.6e-12 76.6 87 47.1
CsaV3_7G018800 Cucumis sativus L. HOM05D006058 ORTHO05D000001 7.1e-08 61.2 60 48.3
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 2.1e-07 59.7 75 40.0


User provided reference genes

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