Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 6.7e-142 507.3 250 100.0
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 1.3e-129 466.5 250 89.6
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 3.6e-127 458.4 250 89.6
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 9.8e-125 450.3 250 87.2
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 2.2e-124 449.1 250 87.2
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 9.2e-123 443.7 250 85.6
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 1.2e-111 406.8 250 78.4
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 3.7e-108 395.2 246 77.6
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 4.9e-108 394.8 250 76.4
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 1.9e-107 392.9 250 75.6
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 4.1e-107 391.7 250 78.8
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 2.7e-106 389.0 250 75.2
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 4.6e-106 388.3 253 76.7
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 6.6e-105 384.4 250 76.4
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 1.1e-104 383.6 250 74.8
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 1.5e-104 383.3 255 72.9
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 1.5e-104 383.3 250 74.4
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 1.2e-103 380.2 251 73.3
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 1.2e-103 380.2 249 74.3
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 1.6e-103 379.8 250 75.6
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 6.2e-103 377.9 250 72.4
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 6.8e-102 374.4 250 77.6
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.0e-101 372.9 250 72.0
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 5.8e-101 371.3 252 74.2
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 1.3e-100 370.2 250 72.8
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 4.9e-100 368.2 244 72.5
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 3.2e-99 365.5 250 72.0
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 4.1e-99 365.2 250 73.2
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 1.6e-98 363.2 250 71.2
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 2.1e-98 362.8 244 72.5
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 7.8e-98 360.9 248 70.6
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 1.0e-97 360.5 250 69.2
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 1.7e-97 359.8 250 70.4
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 3.9e-97 358.6 250 72.4
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 6.6e-97 357.8 250 70.8
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 6.6e-97 357.8 250 70.8
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 1.5e-96 356.7 251 69.3
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 2.5e-96 355.9 250 67.6
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 4.3e-96 355.1 251 68.9
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 9.5e-96 354.0 251 68.5
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 9.5e-96 354.0 250 68.4
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 1.2e-95 353.6 250 69.6
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 8.1e-95 350.9 245 70.2
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.1e-94 350.5 244 71.7
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 2.3e-94 349.4 251 67.3
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 8.9e-94 347.4 244 68.9
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 1.2e-93 347.1 250 67.2
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 1.5e-93 346.7 250 66.8
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 2.0e-93 346.3 250 66.4
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 2.0e-93 346.3 250 66.8
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 2.6e-93 345.9 315 60.6
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 4.4e-93 345.1 252 65.5
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 7.6e-93 344.4 250 68.8
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 7.6e-93 344.4 244 68.4
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 7.6e-93 344.4 248 67.7
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 1.3e-92 343.6 251 66.5
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 1.3e-92 343.6 242 68.6
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 2.2e-92 342.8 251 66.5
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 3.8e-92 342.0 255 67.1
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 3.8e-92 342.0 252 67.1
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 4.9e-92 341.7 250 65.6
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 4.9e-92 341.7 245 69.0
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 8.4e-92 340.9 251 66.1
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 1.4e-91 340.1 251 66.5
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 7.1e-91 337.8 251 65.7
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 9.2e-91 337.4 226 71.2
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 9.2e-91 337.4 244 69.7
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 1.2e-90 337.0 261 63.6
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 2.1e-90 336.3 257 64.2
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 2.7e-90 335.9 253 66.8
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 6.0e-90 334.7 251 65.7
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 1.7e-89 333.2 226 70.4
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 3.9e-89 332.0 251 64.5
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.9e-88 329.7 260 65.0
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 3.3e-88 328.9 234 67.5
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 5.6e-88 328.2 250 64.4
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 1.2e-87 327.0 239 64.0
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 8.1e-87 324.3 226 68.6
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.8e-86 323.2 233 66.5
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 6.9e-86 321.2 301 54.5
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 5.8e-85 318.2 250 61.6
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.3e-84 317.0 277 57.4
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 1.4e-83 313.5 250 60.8
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 9.3e-83 310.8 248 61.7
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 9.3e-83 310.8 200 75.5
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 4.6e-82 308.5 189 78.3
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 2.3e-81 306.2 302 56.0
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 3.0e-81 305.8 250 59.6
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 3.9e-81 305.4 258 57.4
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 5.6e-80 301.6 187 77.0
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 1.3e-79 300.4 187 75.9
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 2.4e-78 296.2 242 59.5
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 5.8e-77 291.6 199 70.9
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 2.2e-76 289.7 212 62.7
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 1.9e-72 276.6 223 60.1
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.1e-71 273.1 247 55.1
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 1.8e-70 270.0 246 55.7
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 2.9e-68 262.7 246 52.8
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 1.3e-65 253.8 249 52.2
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.4e-62 243.8 209 57.4
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.8e-57 226.9 152 69.1
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 1.2e-53 214.2 165 64.2
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 3.0e-41 172.9 120 65.8
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 7.4e-40 168.3 222 41.4
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 8.2e-31 138.3 180 41.7
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 1.5e-24 117.5 167 40.7
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 3.3e-24 116.3 136 50.0
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 3.3e-24 116.3 167 40.1
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 6.3e-23 112.1 214 34.1
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 8.2e-23 111.7 206 31.1
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 1.6e-21 107.5 203 34.5
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 2.2e-20 103.6 163 35.6
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 1.9e-19 100.5 84 57.1
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 2.0e-16 90.5 64 70.3
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 7.5e-16 88.6 130 37.7
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 7.7e-13 78.6 66 60.6
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 6.8e-09 65.5 43 65.1
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 6.8e-09 65.5 43 65.1
COL.COLO4_09126 Corchorus olitorius HOM05D002055 ORTHO05D002120 2.6e-08 63.5 55 61.8


User provided reference genes

Program Settings