Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 2.6e-224 782.3 596 100.0
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.6e-157 560.5 599 79.6
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 3.8e-151 539.3 597 78.9
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 8.8e-148 528.1 597 78.2
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.3e-127 461.1 596 55.0
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 2.9e-106 390.2 537 69.8
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.4e-100 371.3 543 63.5
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 9.9e-99 365.2 599 61.4
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.1e-97 361.7 533 67.4
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.2e-96 358.2 536 66.2
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 8.6e-95 352.1 537 66.3
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 1.5e-94 351.3 531 67.8
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.6e-93 347.8 535 63.7
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 2.1e-93 347.4 531 69.3
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 2.1e-93 347.4 539 63.1
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 8.1e-93 345.5 533 64.7
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.0e-92 343.2 535 64.3
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 5.2e-92 342.8 546 58.4
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.2e-91 341.7 530 61.1
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 5.8e-91 339.3 611 59.4
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 8.4e-90 335.5 554 69.5
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.4e-89 334.0 565 62.1
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 7.8e-88 328.9 523 60.0
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 1.3e-87 328.2 526 59.3
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 3.9e-87 326.6 535 61.5
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.1e-86 325.1 535 69.2
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.9e-86 324.3 536 60.3
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 4.3e-86 323.2 534 68.5
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 7.3e-86 322.4 528 71.8
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 4.8e-85 319.7 553 62.7
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 6.2e-85 319.3 596 61.2
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.8e-84 317.8 533 65.3
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 5.3e-84 316.2 442 62.0
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.2e-83 315.1 538 66.9
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.5e-83 314.7 543 62.4
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 2.6e-83 313.9 532 64.3
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 4.4e-83 313.2 555 62.0
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 2.9e-82 310.5 546 64.1
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 2.9e-82 310.5 602 59.0
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.9e-82 310.5 457 66.3
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.9e-82 309.7 555 62.3
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 4.2e-81 306.6 546 62.8
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 5.4e-81 306.2 532 70.7
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 9.3e-81 305.4 481 62.0
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.7e-80 303.9 551 61.9
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.3e-79 301.6 571 60.9
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 2.3e-79 300.8 546 58.2
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.0e-79 300.4 454 73.6
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 8.7e-79 298.9 543 61.3
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.5e-78 298.1 459 68.4
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.3e-78 297.0 541 63.4
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 3.3e-78 297.0 539 54.2
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 4.3e-78 296.6 186 83.9
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.8e-76 291.2 490 60.2
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 1.8e-76 291.2 550 57.5
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 4.0e-76 290.0 456 69.7
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 4.0e-76 290.0 539 57.3
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 4.0e-76 290.0 177 83.6
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.0e-76 290.0 600 55.0
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 5.3e-76 289.7 572 57.2
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 6.9e-76 289.3 583 62.4
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 9.0e-76 288.9 535 57.0
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.2e-75 288.5 180 84.4
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.6e-75 287.3 548 59.3
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 3.4e-75 287.0 186 81.7
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 3.4e-75 287.0 572 52.8
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 9.9e-75 285.4 594 58.1
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.3e-74 285.0 182 81.9
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.7e-74 284.6 539 60.7
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 4.9e-74 283.1 558 59.9
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 6.4e-74 282.7 565 54.2
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 6.4e-74 282.7 541 61.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 6.4e-74 282.7 183 82.0
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.1e-73 282.0 190 79.5
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.9e-73 281.2 452 67.3
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 4.2e-73 280.0 456 69.3
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 4.2e-73 280.0 593 55.3
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 5.4e-73 279.6 456 67.5
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 9.3e-73 278.9 544 63.6
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 1.2e-72 278.5 498 53.6
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 1.6e-72 278.1 178 83.1
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 2.7e-72 277.3 531 64.6
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 4.6e-72 276.6 595 60.5
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.0e-71 273.9 539 50.8
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 3.9e-71 273.5 448 67.0
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 3.9e-71 273.5 458 67.5
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.1e-70 271.9 163 84.7
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.5e-70 270.8 176 80.7
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 3.3e-70 270.4 447 71.4
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 4.3e-70 270.0 455 64.6
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 5.6e-70 269.6 601 52.9
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 7.4e-70 269.2 458 65.5
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 9.6e-70 268.9 558 61.8
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-69 268.5 456 61.6
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.6e-69 268.1 178 79.8
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 3.7e-69 266.9 155 87.1
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.2e-67 261.9 184 75.0
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 2.0e-67 261.2 529 67.7
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 4.5e-67 260.0 174 75.9
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.0e-66 258.8 537 59.2
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.0e-66 258.8 178 75.8
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 2.9e-66 257.3 178 75.3
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.9e-66 257.3 178 75.3
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 3.8e-66 256.9 179 76.5
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 6.5e-66 256.1 456 65.6
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.9e-65 254.6 146 87.7
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.9e-65 254.6 528 49.2
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 3.2e-65 253.8 489 59.3
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 5.5e-65 253.1 177 74.6
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.5e-64 250.4 175 78.3
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 3.9e-63 246.9 457 54.7
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 6.7e-63 246.1 608 52.8
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 6.7e-63 246.1 576 55.2
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 2.5e-62 244.2 180 72.8
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 6.2e-61 239.6 173 74.0
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-60 238.8 474 51.3
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-59 234.6 455 55.6
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 4.5e-59 233.4 457 56.9
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 5.8e-59 233.0 453 54.3
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 7.6e-59 232.6 155 78.7
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.3e-58 231.9 147 80.3
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-57 228.4 133 86.5
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 5.5e-57 226.5 457 55.8
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 5.5e-57 226.5 131 87.0
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-56 225.3 125 87.2
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.2e-56 225.3 132 86.4
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 4.6e-56 223.4 131 86.3
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 6.1e-56 223.0 165 71.5
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 7.9e-56 222.6 572 49.3
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 3.0e-55 220.7 576 53.0
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 5.1e-55 219.9 455 54.7
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 8.7e-55 219.2 185 68.1
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 8.7e-55 219.2 188 66.0
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-54 217.2 131 84.0
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-53 215.3 178 69.1
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.2e-53 214.5 455 36.5
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.8e-53 214.2 181 66.9
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 2.4e-52 211.1 173 69.4
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 2.4e-52 211.1 173 69.4
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 3.1e-52 210.7 478 50.4
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 4.5e-51 206.8 453 51.7
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 7.7e-51 206.1 456 41.7
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 6.7e-47 193.0 135 77.0
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 9.7e-46 189.1 181 60.8
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.2e-45 188.0 101 94.1
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 1.8e-44 184.9 409 61.4
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 9.1e-44 182.6 165 63.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 5.0e-42 176.8 139 72.7
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 3.6e-40 170.6 131 72.5
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 4.7e-40 170.2 124 73.4
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.5e-38 165.2 106 78.3
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.7e-37 161.8 103 79.6
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 5.9e-35 153.3 158 56.3
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 8.5e-34 149.4 105 69.5
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.4e-31 142.1 177 49.7
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.2e-31 140.2 464 55.6
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 2.6e-30 137.9 172 49.4
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 3.3e-30 137.5 84 83.3
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 7.5e-30 136.3 75 89.3
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 2.2e-29 134.8 84 82.1
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 7.0e-28 129.8 134 48.5
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 8.5e-26 122.9 85 74.1
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 2.5e-25 121.3 85 72.9
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.6e-22 111.3 527 42.7
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 2.8e-21 107.8 62 83.9
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 3.7e-21 107.5 68 79.4
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-20 105.1 67 79.1
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 7.0e-20 103.2 52 94.2
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 1.0e-18 99.4 68 79.4
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 2.9e-18 97.8 56 87.5
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 2.5e-17 94.7 188 41.0
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 2.5e-17 94.7 162 45.7
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 9.4e-17 92.8 56 83.9
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 1.2e-14 85.9 89 55.1
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 2.2e-13 81.6 57 64.9
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 8.3e-13 79.7 85 54.1
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 6.6e-10 70.1 50 66.0
FvH4_2g11951 Fragaria vesca HOM05D003848 ORTHO05D035678 6.8e-07 60.1 50 60.0
FAN24G2199 Fragaria x ananassa HOM05D003848 ORTHO05D035678 5.7e-06 57.0 50 58.0


User provided reference genes

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