Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 8.5e-79 297.0 154 100.0
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 8.9e-28 127.5 84 72.6
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 3.4e-27 125.6 84 70.2
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 1.7e-26 123.2 84 67.9
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 2.2e-26 122.9 84 69.0
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.9e-26 122.5 84 66.7
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.4e-25 120.2 84 66.7
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 9.6e-22 107.5 84 61.9
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 2.8e-21 105.9 75 68.0
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 2.8e-21 105.9 84 58.3
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.6e-21 105.5 84 59.5
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 3.6e-21 105.5 84 59.5
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.1e-20 104.0 84 57.1
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.8e-20 103.2 83 57.8
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.8e-20 103.2 82 58.5
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 3.1e-20 102.4 84 58.3
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 3.1e-20 102.4 84 56.0
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 5.3e-20 101.7 83 57.8
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 6.9e-20 101.3 75 64.0
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 6.9e-20 101.3 84 56.0
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.2e-19 100.5 82 56.1
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 1.5e-19 100.1 84 53.6
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 1.5e-19 100.1 82 57.3
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.6e-19 99.4 84 53.6
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 2.6e-19 99.4 84 54.8
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 2.6e-19 99.4 84 53.6
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.4e-19 98.6 84 54.8
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.4e-19 98.6 85 55.3
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.4e-19 98.6 84 53.6
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 4.4e-19 98.6 83 55.4
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 4.4e-19 98.6 82 56.1
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 5.8e-19 98.2 84 53.6
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 5.8e-19 98.2 75 61.3
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 7.6e-19 97.8 83 55.4
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.6e-19 97.8 83 55.4
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.9e-19 97.4 83 55.4
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 9.9e-19 97.4 84 53.6
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.3e-18 97.1 76 63.2
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 1.7e-18 96.7 84 52.4
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 1.7e-18 96.7 96 51.0
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 2.2e-18 96.3 84 48.8
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.2e-18 96.3 84 51.2
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 2.9e-18 95.9 84 53.6
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 2.9e-18 95.9 85 56.5
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.9e-18 95.9 84 51.2
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 2.9e-18 95.9 84 51.2
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.8e-18 95.5 83 54.2
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 3.8e-18 95.5 84 51.2
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.9e-18 95.1 83 54.2
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.9e-18 95.1 84 50.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 8.4e-18 94.4 84 53.6
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.1e-17 94.0 82 52.4
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.1e-17 94.0 84 51.2
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.1e-17 94.0 75 62.7
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.4e-17 93.6 83 53.0
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 1.4e-17 93.6 84 51.2
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.9e-17 93.2 83 54.2
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.9e-17 93.2 84 54.8
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 1.9e-17 93.2 74 59.5
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.9e-17 93.2 83 53.0
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 2.4e-17 92.8 75 57.3
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.4e-17 92.8 84 50.0
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 2.4e-17 92.8 85 52.9
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.2e-17 92.4 74 59.5
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.2e-17 92.4 83 51.8
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.2e-17 92.4 83 51.8
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 4.2e-17 92.0 85 54.1
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 5.4e-17 91.7 83 53.0
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 5.4e-17 91.7 84 53.6
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 5.4e-17 91.7 84 48.8
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 7.1e-17 91.3 85 49.4
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 7.1e-17 91.3 85 55.3
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 7.1e-17 91.3 84 54.8
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 9.3e-17 90.9 85 51.8
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.2e-16 90.5 85 51.8
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.2e-16 90.5 84 45.2
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.7e-16 89.4 101 46.5
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.7e-16 89.4 84 52.4
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.5e-16 89.0 83 44.6
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 4.6e-16 88.6 85 50.6
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 4.6e-16 88.6 84 52.4
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 6.0e-16 88.2 84 50.0
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 7.9e-16 87.8 84 50.0
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.0e-15 87.4 84 48.8
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 1.0e-15 87.4 84 48.8
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.3e-15 87.0 108 43.5
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 2.3e-15 86.3 84 47.6
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 2.3e-15 86.3 81 48.1
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 3.9e-15 85.5 61 63.9
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.1e-15 85.1 85 48.2
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 5.1e-15 85.1 84 46.4
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.1e-15 85.1 84 47.6
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 8.7e-15 84.3 84 50.0
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 8.7e-15 84.3 84 44.0
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.9e-14 83.2 84 46.4
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.9e-14 83.2 85 54.1
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.5e-14 82.8 84 50.0
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 7.3e-14 81.3 84 44.0
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 7.3e-14 81.3 84 46.4
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.3e-14 81.3 82 48.8
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 7.3e-14 81.3 66 54.5
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 9.6e-14 80.9 83 48.2
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.3e-13 80.5 83 48.2
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.3e-13 80.5 83 48.2
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.6e-13 80.1 84 44.0
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-13 80.1 83 47.0
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-13 80.1 83 47.0
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-13 80.1 83 47.0
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-13 80.1 83 47.0
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.6e-13 80.1 83 47.0
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.6e-13 80.1 83 47.0
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.6e-13 80.1 83 47.0
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.6e-13 80.1 83 47.0
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.6e-13 80.1 83 48.2
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 2.1e-13 79.7 84 42.9
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.1e-13 79.7 84 42.9
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.8e-13 79.3 83 39.8
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 2.8e-13 79.3 82 43.9
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 3.6e-13 79.0 84 46.4
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 3.6e-13 79.0 83 47.0
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 3.6e-13 79.0 83 47.0
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.6e-13 79.0 83 49.4
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 4.8e-13 78.6 85 45.9
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.8e-13 78.6 89 46.1
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 6.2e-13 78.2 82 47.6
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.1e-12 77.4 83 45.8
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-12 77.4 83 45.8
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.4e-12 77.0 82 47.6
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 1.4e-12 77.0 84 44.0
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.4e-12 77.0 82 47.6
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.8e-12 76.6 85 44.7
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-12 76.6 84 44.0
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.8e-12 76.6 84 44.0
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.8e-12 76.6 83 44.6
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 5.3e-12 75.1 84 44.0
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 6.9e-12 74.7 83 47.0
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.9e-12 74.7 83 42.2
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 9.0e-12 74.3 84 44.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-11 73.6 84 44.0
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.6e-11 72.8 75 50.7
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 3.4e-11 72.4 79 44.3
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 5.8e-11 71.6 79 45.6
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 9.9e-11 70.9 83 42.2
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.3e-10 70.5 84 40.5
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.7e-10 70.1 70 50.0
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.9e-10 69.3 86 41.9
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 3.2e-09 65.9 86 36.0
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 4.2e-09 65.5 83 41.0
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.2e-08 63.9 84 40.5
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.2e-08 63.9 76 38.2
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 3.5e-08 62.4 63 52.4


User provided reference genes

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