Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 2.9e-179 631.7 311 100.0
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 1.9e-154 549.3 311 84.6
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 7.8e-148 527.3 310 83.2
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 3.2e-141 505.4 310 79.7
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 4.2e-141 505.0 310 79.4
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 7.1e-141 504.2 310 80.0
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 7.4e-130 467.6 314 72.3
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 2.8e-129 465.7 308 73.1
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 5.3e-128 461.5 310 70.6
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 5.3e-128 461.5 307 72.3
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 6.9e-128 461.1 312 73.1
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 2.2e-126 456.1 317 69.7
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 1.8e-123 446.4 313 69.3
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 1.5e-122 443.4 311 71.4
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.5e-122 443.4 312 67.9
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.9e-122 443.0 311 69.5
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 1.3e-121 440.3 291 73.2
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 2.0e-119 433.0 291 70.1
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 4.5e-119 431.8 312 66.3
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 1.0e-118 430.6 232 86.2
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 1.0e-118 430.6 232 86.2
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.0e-118 430.6 322 66.8
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.7e-118 429.9 313 66.8
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.7e-118 429.9 313 66.8
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 3.8e-118 428.7 313 68.7
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 6.5e-118 427.9 297 68.7
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 8.4e-118 427.6 298 69.5
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 3.2e-117 425.6 314 65.0
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 5.5e-117 424.9 309 66.0
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 5.5e-117 424.9 291 68.4
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 7.1e-117 424.5 262 74.4
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 1.2e-116 423.7 291 68.4
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.6e-116 423.3 314 66.9
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 1.6e-116 423.3 314 66.6
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 2.1e-116 422.9 314 66.2
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 2.1e-116 422.9 324 64.8
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.7e-116 422.5 313 64.2
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 7.9e-116 421.0 296 66.2
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 7.9e-116 421.0 268 72.0
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 1.0e-115 420.6 300 67.3
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 1.3e-115 420.2 298 64.8
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 3.9e-115 418.7 314 65.6
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 3.9e-115 418.7 295 67.8
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 5.1e-115 418.3 262 72.9
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 6.7e-115 417.9 311 65.0
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 8.7e-115 417.5 288 70.8
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 1.9e-114 416.4 262 73.3
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 3.3e-114 415.6 313 64.9
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 7.4e-114 414.5 314 63.1
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 9.7e-114 414.1 307 66.4
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 9.7e-114 414.1 250 75.2
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 1.4e-112 410.2 312 66.0
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.4e-112 410.2 288 69.1
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 2.4e-112 409.5 308 61.4
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 5.3e-112 408.3 295 65.1
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 6.9e-112 407.9 315 63.5
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.0e-111 406.4 291 67.4
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 4.5e-111 405.2 313 63.6
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 1.0e-110 404.1 315 64.4
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.7e-110 403.3 313 64.9
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 3.8e-110 402.1 309 63.1
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 3.8e-110 402.1 314 60.8
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 3.8e-110 402.1 305 65.6
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 5.0e-110 401.7 260 71.9
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 6.5e-110 401.4 261 70.9
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 1.4e-109 400.2 232 79.3
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.4e-109 400.2 256 72.3
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 1.9e-109 399.8 246 75.6
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 4.2e-109 398.7 255 72.2
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 7.2e-109 397.9 300 64.7
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 2.3e-107 392.9 256 69.5
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 3.9e-107 392.1 308 65.3
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 1.5e-106 390.2 271 66.8
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.3e-106 388.7 339 58.1
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.3e-106 388.7 339 58.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 2.8e-105 386.0 291 64.3
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 6.3e-105 384.8 311 59.8
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 1.1e-104 384.0 297 62.6
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 6.9e-104 381.3 297 62.0
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.5e-103 380.2 295 61.0
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.7e-102 376.7 230 77.0
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 5.0e-102 375.2 300 61.0
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 6.7e-99 364.8 316 59.8
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.3e-97 360.5 257 66.1
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 1.7e-97 360.1 323 59.1
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 1.1e-96 357.5 277 61.4
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 5.3e-96 355.1 323 58.5
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 7.0e-96 354.8 288 62.5
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 9.1e-96 354.4 290 57.9
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 2.6e-95 352.8 305 56.1
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.5e-93 346.3 307 59.6
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 3.0e-83 312.8 339 52.8
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 7.5e-82 308.1 247 59.9
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.5e-77 293.9 251 59.0
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 9.4e-77 291.2 242 58.3
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 1.4e-75 287.3 243 56.0
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 2.0e-74 283.5 181 70.7
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 1.4e-72 277.3 254 55.1
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.5e-69 267.3 151 81.5
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 9.5e-69 264.6 242 55.4
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 1.5e-66 257.3 173 65.3
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 2.4e-64 250.0 176 68.8
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.2e-55 221.1 173 60.7
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 9.8e-50 201.4 262 41.2
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.9e-45 187.2 245 40.8
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 7.3e-45 185.3 246 42.3
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 2.1e-44 183.7 171 58.5
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 1.7e-41 174.1 193 51.3
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 2.1e-39 167.2 167 51.5
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 8.9e-35 151.8 113 61.9
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 4.2e-32 142.9 99 67.7
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 2.1e-31 140.6 112 59.8
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 6.6e-30 135.6 94 69.1
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.5e-29 133.7 98 64.3
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 1.2e-26 124.8 119 52.9
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 3.4e-26 123.2 119 52.1
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 4.4e-26 122.9 178 39.3
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 8.4e-25 118.6 149 41.6
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 6.0e-23 112.5 63 82.5
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 6.2e-20 102.4 137 41.6
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 6.9e-19 99.0 58 74.1
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 1.2e-18 98.2 155 39.4
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 2.1e-15 87.4 213 31.5
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 7.4e-13 79.0 116 39.7
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 9.0e-11 72.0 56 51.8
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 7.6e-10 68.9 120 33.3
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 1.0e-09 68.6 93 41.9
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 2.2e-09 67.4 116 36.2
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-08 64.7 61 52.5
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 4.2e-08 63.2 159 31.4
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 2.7e-07 60.5 50 62.0
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 4.6e-07 59.7 41 61.0
Gohir.A05G354300 Gossypium hirsutum HOM05D001287 ORTHO05D001226 1.0e-06 58.5 203 26.6
QL02p071668 Quercus lobata HOM05D001287 ORTHO05D001226 1.0e-06 58.5 207 23.2
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 1.0e-06 58.5 56 51.8
Oeu011961.1 Olea europaea HOM05D001287 ORTHO05D001226 3.0e-06 57.0 218 22.5
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 6.7e-06 55.8 50 58.0
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 6.7e-06 55.8 49 55.1
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 8.7e-06 55.5 50 58.0


User provided reference genes

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