Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1771.5 867 100.0
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1565.4 864 89.2
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1543.5 866 87.3
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1540.4 868 87.3
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1536.2 868 87.2
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1533.1 868 86.8
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1525.8 871 87.8
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1505.0 866 86.4
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1481.1 868 83.6
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1449.5 871 83.8
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1424.1 865 82.5
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1413.3 875 81.3
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1409.4 900 78.2
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1404.0 910 77.9
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1399.8 870 80.0
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1392.9 867 80.9
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1392.1 844 82.0
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1391.3 871 81.4
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1390.6 870 81.8
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1388.2 892 79.5
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1382.5 873 79.6
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1364.0 963 72.6
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1360.9 866 78.8
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1356.7 868 77.9
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1356.7 881 78.5
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1355.5 881 78.1
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1349.3 888 77.6
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1347.4 906 76.0
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1343.6 871 78.2
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1332.8 888 76.9
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1328.5 862 77.4
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1325.8 871 77.5
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1320.8 871 76.8
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1317.0 878 76.2
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1315.8 866 77.4
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1315.4 890 75.2
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1307.4 890 74.9
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1306.2 871 75.0
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1303.9 879 75.3
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1303.5 913 73.2
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1300.0 914 73.1
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1298.5 871 76.2
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1297.7 890 74.5
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1287.7 744 84.9
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1280.0 871 76.0
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1278.5 860 76.7
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1276.9 868 75.0
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1275.0 871 75.1
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1272.3 889 74.1
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1270.4 874 75.2
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1270.0 863 75.1
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1267.7 872 74.5
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1266.1 866 73.9
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1265.8 869 74.8
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1265.0 874 75.1
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1264.2 873 72.9
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1264.2 866 74.6
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1263.1 872 74.8
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1260.7 858 75.2
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1260.0 898 72.0
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1256.9 897 73.5
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1255.0 861 75.7
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1251.1 867 73.5
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1249.2 871 73.1
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1248.4 873 74.1
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1248.0 884 72.7
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1247.6 864 73.3
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1243.8 864 73.4
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1241.1 900 71.1
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1236.5 872 74.9
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1231.5 941 67.9
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1230.7 866 72.6
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1221.5 870 71.6
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1219.1 902 69.8
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1213.0 902 69.5
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1208.7 902 69.3
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1201.8 862 71.5
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1201.8 865 71.1
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1201.4 880 70.3
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1199.5 885 70.1
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1195.3 863 69.9
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1193.3 870 71.3
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1192.6 870 71.4
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1192.6 866 71.8
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1189.5 866 71.2
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1184.9 882 69.7
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1184.5 891 69.2
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1183.3 869 71.0
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1181.4 886 70.3
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1179.5 882 70.5
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1179.1 871 69.5
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1175.2 865 70.1
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1169.8 894 68.5
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1167.5 887 69.9
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1167.1 879 69.2
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1157.5 867 70.0
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1152.9 894 66.6
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1152.1 884 69.2
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1151.7 853 69.2
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1149.8 885 69.0
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1149.8 908 66.6
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1148.7 884 69.1
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1147.9 866 69.1
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1146.3 881 69.2
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1144.8 871 69.9
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1140.6 884 68.4
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1140.2 862 69.6
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1139.8 882 68.5
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1134.4 861 68.8
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1128.6 862 67.5
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1123.2 942 62.4
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1123.2 867 66.7
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1120.9 893 67.3
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1118.2 866 68.5
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 0.0e+00 1114.0 812 71.2
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1111.7 869 67.1
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1095.5 838 69.0
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 0.0e+00 1095.1 787 70.8
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1088.9 915 65.4
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.2e-311 1072.8 833 69.0
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.2e-307 1059.7 874 63.8
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.0e-306 1055.0 881 64.1
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 4.5e-302 1041.2 957 60.1
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.7e-301 1039.3 863 64.1
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 9.4e-300 1033.5 867 62.6
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.8e-296 1021.1 899 60.8
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 7.0e-295 1017.3 897 60.6
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 5.5e-292 1007.7 602 82.9
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 2.7e-283 978.8 585 82.6
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.2e-277 959.1 898 59.2
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.6e-275 951.8 881 59.4
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 7.7e-270 934.1 823 59.7
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 8.3e-264 914.1 878 55.1
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.6e-259 899.8 849 56.4
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 3.7e-256 888.6 867 54.7
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.4e-255 885.9 807 58.2
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 3.3e-252 875.5 573 77.8
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.6e-251 873.2 903 52.2
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 2.3e-250 869.4 863 55.4
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.0e-241 839.7 951 50.1
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 2.7e-238 829.3 832 54.6
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 1.2e-233 813.9 609 66.3
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 3.2e-215 752.7 571 64.3
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 6.9e-210 734.9 846 46.8
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 8.4e-208 728.0 862 46.9
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.2e-201 707.6 635 61.1
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.9e-200 703.0 861 45.1
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 7.9e-198 694.9 635 60.0
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.4e-186 657.5 613 53.0
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.8e-179 632.5 880 44.0
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 1.8e-173 614.0 560 59.8
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.6e-153 547.7 499 57.5
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 5.9e-145 519.2 429 63.2
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 3.3e-143 513.5 571 47.1
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 5.6e-119 433.0 626 39.0
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.0e-112 412.1 512 46.7
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 6.6e-112 409.5 479 49.5
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.9e-111 407.9 401 58.9
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 2.2e-99 367.9 265 68.7
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 3.1e-93 347.4 698 31.8
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.6e-86 325.1 225 68.9
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.4e-82 312.0 265 61.1
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 7.9e-73 279.6 175 75.4
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 5.9e-68 263.5 520 30.6
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.8e-61 241.9 157 76.4
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 3.5e-60 237.7 504 29.8
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 2.7e-44 184.9 359 35.4
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 1.1e-34 152.9 197 48.7
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 3.6e-25 121.3 369 31.7
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.3e-22 112.8 74 78.4
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 6.4e-22 110.5 179 38.5
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 2.5e-18 98.6 71 63.4
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.3e-18 98.2 123 50.4
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 9.2e-13 80.1 74 59.5


User provided reference genes

Program Settings