Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 1.3e-271 939.1 464 100.0
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 4.1e-217 758.1 477 79.9
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 1.7e-207 726.1 464 76.3
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 1.0e-204 716.8 464 75.4
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 4.0e-204 714.9 483 74.7
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 2.3e-183 646.0 472 70.3
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 6.0e-160 568.2 473 60.3
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 1.5e-158 563.5 472 60.4
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 7.3e-150 534.6 468 56.8
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 3.6e-149 532.3 468 57.1
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 3.4e-147 525.8 459 56.9
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 5.8e-147 525.0 468 57.1
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 3.3e-142 509.2 470 54.7
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 5.3e-140 501.9 458 55.5
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 4.4e-139 498.8 459 54.2
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 1.2e-136 490.7 467 55.2
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 2.1e-136 490.0 465 53.5
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 3.9e-135 485.7 457 54.9
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 1.1e-134 484.2 489 51.7
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 1.4e-132 477.2 498 50.8
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 7.6e-131 471.5 440 54.8
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 1.9e-129 466.8 443 54.0
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 9.3e-129 464.5 440 54.3
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 9.0e-124 448.0 504 49.0
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 8.4e-122 441.4 455 50.3
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.1e-121 441.0 421 53.7
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.9e-121 440.3 427 53.2
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 8.2e-117 424.9 455 49.5
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 2.3e-111 406.8 462 47.8
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 2.8e-109 399.8 465 47.5
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 8.2e-109 398.3 455 45.7
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 8.5e-106 388.3 370 55.1
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 5.5e-105 385.6 370 54.9
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 1.2e-104 384.4 452 44.7
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 3.9e-103 379.4 442 45.9
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 3.3e-102 376.3 454 43.8
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 3.7e-101 372.9 452 44.0
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 3.7e-101 372.9 439 46.7
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 6.9e-100 368.6 466 44.0
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 6.9e-100 368.6 467 43.9
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 9.1e-100 368.2 506 40.9
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 1.5e-99 367.5 455 44.4
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 5.9e-99 365.5 462 45.7
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 2.5e-97 360.1 453 44.6
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 9.4e-97 358.2 451 41.9
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 6.1e-96 355.5 451 42.1
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 6.1e-96 355.5 451 42.1
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 7.9e-96 355.1 451 41.7
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 2.0e-94 350.5 451 41.7
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 3.1e-92 343.2 441 43.3
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 1.7e-90 337.4 322 55.3
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 2.2e-90 337.0 388 46.9
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 1.1e-89 334.7 405 45.2
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 5.3e-84 315.8 450 40.7
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 1.6e-83 314.3 475 38.9
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 5.0e-82 309.3 454 39.0
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 5.5e-81 305.8 463 40.2
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 1.6e-80 304.3 464 37.9
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 1.0e-79 301.6 401 41.9
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 2.0e-78 297.4 450 38.9
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 2.8e-77 293.5 247 62.3
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 4.1e-76 289.7 237 64.1
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 9.1e-76 288.5 453 37.7
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 3.5e-75 286.6 411 41.4
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 3.8e-74 283.1 213 62.0
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 2.7e-72 276.9 400 39.0
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 8.0e-72 275.4 461 35.8
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 1.7e-69 267.7 249 57.4
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 2.8e-69 266.9 461 35.1
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 6.3e-69 265.8 389 39.1
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 2.1e-64 250.8 305 47.2
Gohir.D11G218200 Gossypium hirsutum HOM05D007808 ORTHO05D009895 1.9e-49 201.1 156 64.1
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 5.2e-47 193.0 257 42.4
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 7.1e-44 182.6 291 37.1
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 2.6e-30 137.5 89 71.9
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 3.0e-26 124.0 400 26.8
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 4.5e-22 110.2 254 29.5
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 2.5e-17 94.4 454 22.7
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.1e-16 91.3 54 70.4
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 2.8e-16 90.9 55 67.3
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 3.8e-13 80.5 467 22.5
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 2.8e-08 64.3 49 59.2


User provided reference genes

Program Settings