Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 6.1e-103 377.5 189 100.0
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 1.3e-92 343.2 188 88.3
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 2.8e-92 342.0 188 87.8
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 1.8e-91 339.3 188 87.2
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 2.0e-90 335.9 190 88.9
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 5.2e-78 294.7 188 76.1
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 7.5e-77 290.8 187 77.0
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 2.8e-76 288.9 186 76.3
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 6.3e-76 287.7 195 73.3
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 8.3e-76 287.3 185 75.7
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 1.2e-74 283.5 186 75.3
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 1.6e-74 283.1 186 74.7
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 2.0e-74 282.7 188 72.3
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 2.0e-74 282.7 186 74.7
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 1.0e-73 280.4 187 73.3
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 1.3e-73 280.0 190 72.6
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 3.8e-73 278.5 187 72.2
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 5.0e-73 278.1 187 72.2
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 7.3e-72 274.2 189 73.0
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 9.5e-72 273.9 187 73.3
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 1.2e-71 273.5 186 70.4
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 1.6e-71 273.1 184 72.8
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 2.1e-71 272.7 185 69.2
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 4.7e-71 271.6 192 71.9
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 1.0e-70 270.4 188 70.7
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 1.4e-70 270.0 180 74.4
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 1.4e-70 270.0 186 71.5
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 1.8e-70 269.6 190 69.5
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 1.8e-70 269.6 186 71.5
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 4.0e-70 268.5 188 70.7
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 1.5e-69 266.5 186 72.6
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 2.0e-69 266.2 189 72.5
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 2.6e-69 265.8 188 67.6
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 2.6e-69 265.8 193 72.0
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 2.6e-69 265.8 187 69.5
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 4.4e-69 265.0 185 70.8
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 7.5e-69 264.2 190 68.9
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 3.7e-68 261.9 188 69.7
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 4.9e-68 261.5 187 71.1
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 8.3e-68 260.8 187 68.4
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 9.2e-67 257.3 191 69.6
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 2.0e-66 256.1 186 67.2
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 3.5e-66 255.4 187 67.9
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 6.0e-66 254.6 162 72.8
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 2.3e-65 252.7 183 71.0
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 5.0e-65 251.5 186 67.2
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 8.6e-65 250.8 161 73.9
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 8.6e-65 250.8 188 65.4
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 1.5e-64 250.0 186 68.8
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 2.5e-64 249.2 177 68.4
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 4.3e-64 248.4 175 70.3
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 7.3e-64 247.7 186 66.1
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 9.5e-64 247.3 194 66.0
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 1.2e-63 246.9 187 64.2
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 1.2e-63 246.9 188 65.4
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 1.6e-63 246.5 185 67.0
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 3.6e-63 245.4 184 67.9
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 4.7e-63 245.0 192 65.1
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 2.3e-62 242.7 178 66.3
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 3.1e-62 242.3 193 64.2
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 4.0e-62 241.9 189 67.7
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 1.2e-61 240.4 290 48.6
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 2.6e-61 239.2 194 63.4
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 9.8e-61 237.3 168 66.1
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 9.8e-61 237.3 190 62.6
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 2.9e-60 235.7 185 64.9
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 4.9e-60 235.0 148 74.3
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 2.1e-58 229.6 187 61.5
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 2.1e-58 229.6 157 69.4
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 6.0e-58 228.0 177 63.8
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 1.0e-57 227.3 189 62.4
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 1.7e-57 226.5 173 67.6
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 1.7e-57 226.5 173 65.9
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 3.0e-57 225.7 190 61.6
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 3.9e-57 225.3 188 61.7
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 1.1e-56 223.8 187 61.0
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 1.1e-56 223.8 187 61.0
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 1.9e-56 223.0 190 61.1
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 3.3e-56 222.2 192 60.9
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 3.3e-56 222.2 189 60.8
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 4.3e-56 221.9 188 61.7
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 4.3e-56 221.9 188 61.7
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 4.3e-56 221.9 188 61.7
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 4.3e-56 221.9 188 61.2
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 1.1e-54 217.2 158 66.5
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 2.3e-54 216.1 157 65.6
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.3e-54 216.1 157 65.6
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 1.2e-53 213.8 168 60.7
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 1.5e-53 213.4 153 66.7
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 5.8e-53 211.5 142 70.4
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 3.7e-52 208.8 172 59.3
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.6e-50 203.4 188 57.4
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 2.7e-50 202.6 127 79.5
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 1.3e-49 200.3 199 54.3
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 3.0e-49 199.1 197 54.3
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 5.1e-49 198.4 127 78.7
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 1.2e-47 193.7 108 89.8
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 2.1e-47 193.0 174 52.3
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 1.5e-45 186.8 187 47.1
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 6.6e-41 171.4 169 49.7
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 3.4e-37 159.1 118 56.8
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 7.6e-37 157.9 142 50.7
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 3.2e-35 152.5 92 77.2
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 7.1e-35 151.4 110 67.3
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.5e-32 143.7 113 59.3
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 1.5e-32 143.7 112 59.8
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 1.6e-26 123.6 149 45.0
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 1.5e-24 117.1 104 53.8
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 1.9e-24 116.7 80 70.0
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 6.4e-20 101.7 126 44.4
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 9.3e-19 97.8 165 38.8
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 7.4e-16 88.2 144 36.1
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 6.2e-15 85.1 64 70.3
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 5.5e-11 72.0 52 53.8
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 3.0e-09 66.2 155 25.8
MCO16G209 Micromonas commoda HOM05D007042 ORTHO05D008441 7.4e-08 61.6 154 27.9
Ah.02g120930 Amaranthus hybridus HOM05D055707 ORTHO05D008441 9.0e-06 54.7 41 61.0


User provided reference genes

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