Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G237600 Theobroma cacao HOM05D000068 ORTHO05D408251 9.6e-57 223.4 124 100.0
Thecc.03G104600 Theobroma cacao HOM05D000068 ORTHO05D004505 8.3e-16 87.4 54 81.5
Ciclev10019251m.g Citrus clementina HOM05D000068 ORTHO05D004505 1.1e-15 87.0 54 81.5
Gohir.A07G067200 Gossypium hirsutum HOM05D000068 ORTHO05D004505 1.4e-15 86.7 54 79.6
PGR044G2190 Punica granatum HOM05D000068 ORTHO05D004505 3.1e-15 85.5 54 79.6
Sc10g0009670 Simmondsia chinensis HOM05D000068 ORTHO05D004505 4.1e-15 85.1 54 77.8
TAR629G1625 Trochodendron aralioides HOM05D000068 ORTHO05D004505 4.1e-15 85.1 54 77.8
Gohir.D07G071800 Gossypium hirsutum HOM05D000068 ORTHO05D004505 5.4e-15 84.7 54 75.9
Gorai.001G075900 Gossypium raimondii HOM05D000068 ORTHO05D004505 5.4e-15 84.7 54 75.9
GSVIVG01008121001 Vitis vinifera HOM05D000068 ORTHO05D004505 5.4e-15 84.7 54 77.8
Ah.11g047580 Amaranthus hybridus HOM05D000068 ORTHO05D004505 7.0e-15 84.3 54 79.6
Os03g0755100 Oryza sativa ssp. japonica HOM05D000068 ORTHO05D004505 7.0e-15 84.3 56 73.2
CDE09G0567 Ceratophyllum demersum HOM05D000068 ORTHO05D004505 9.1e-15 84.0 54 79.6
Hma1.2p1_0322F.1_g124590 Hydrangea macrophylla HOM05D000068 ORTHO05D004505 9.1e-15 84.0 54 77.8
Sabra18G0048100 Salix brachista HOM05D000068 ORTHO05D004505 9.1e-15 84.0 54 77.8
Potri.015G059600 Populus trichocarpa HOM05D000068 ORTHO05D004505 1.2e-14 83.6 54 77.8
Potri.015G059800 Populus trichocarpa HOM05D000068 ORTHO05D004505 1.2e-14 83.6 54 77.8
ATR0827G077 Amborella trichopoda HOM05D000068 ORTHO05D004505 1.6e-14 83.2 54 75.9
Nn4g23472 Nelumbo nucifera HOM05D000068 ORTHO05D004505 1.6e-14 83.2 54 77.8
Potri.018G051800 Populus trichocarpa HOM05D000068 ORTHO05D004505 1.6e-14 83.2 54 75.9
Atru.chr9.515 Acer truncatum HOM05D000068 ORTHO05D004505 2.0e-14 82.8 54 75.9
AUR62021529 Chenopodium quinoa HOM05D000068 ORTHO05D004505 2.0e-14 82.8 54 77.8
AUR62039654 Chenopodium quinoa HOM05D000068 ORTHO05D004505 2.0e-14 82.8 54 77.8
Actinidia35044 Actinidia chinensis HOM05D000068 ORTHO05D004505 2.7e-14 82.4 56 73.2
DCAR_023160 Daucus carota HOM05D000068 ORTHO05D004505 2.7e-14 82.4 56 69.6
Oeu057200.2 Olea europaea HOM05D000068 ORTHO05D004505 2.7e-14 82.4 54 75.9
Hund02568 Selenicereus undatus HOM05D000068 ORTHO05D004505 2.7e-14 82.4 54 74.1
Sabra15G0085000 Salix brachista HOM05D000068 ORTHO05D004505 3.5e-14 82.0 54 77.8
CsaV3_1G006130 Cucumis sativus L. HOM05D000068 ORTHO05D004505 4.5e-14 81.6 56 73.2
Lj5A134G71 Lonicera japonica HOM05D000068 ORTHO05D004505 4.5e-14 81.6 54 74.1
Potri.015G059700 Populus trichocarpa HOM05D000068 ORTHO05D004505 4.5e-14 81.6 54 75.9
SalBow5G3913 Salvia bowleyana HOM05D000068 ORTHO05D004505 4.5e-14 81.6 54 75.9
Sed0027691 Sechium edule HOM05D000068 ORTHO05D004505 4.5e-14 81.6 54 75.9
MSTRG.11332 Avicennia marina HOM05D000068 ORTHO05D004505 5.9e-14 81.3 54 74.1
CARHR263390 Cardamine hirsuta HOM05D000068 ORTHO05D004505 5.9e-14 81.3 56 71.4
Eucgr.K02537 Eucalyptus grandis HOM05D000068 ORTHO05D004505 5.9e-14 81.3 54 74.1
PSO339G1772 Papaver somniferum HOM05D000068 ORTHO05D004505 5.9e-14 81.3 54 74.1
PSO478G0123 Papaver somniferum HOM05D000068 ORTHO05D004505 5.9e-14 81.3 54 74.1
Zm00001eb214670 Zea mays HOM05D000068 ORTHO05D004505 5.9e-14 81.3 56 69.6
Actinidia18979 Actinidia chinensis HOM05D000068 ORTHO05D004505 7.7e-14 80.9 56 73.2
Ca_21761_v3 Cicer arietinum L. HOM05D000068 ORTHO05D004505 7.7e-14 80.9 54 75.9
ClCG04G011670 Citrullus lanatus HOM05D000068 ORTHO05D004505 7.7e-14 80.9 54 75.9
MELO3C002042.2 Cucumis melo HOM05D000068 ORTHO05D004505 1.0e-13 80.5 54 74.1
SGA_v2.0_scaffold733G53532 Striga asiatica HOM05D000068 ORTHO05D004505 1.0e-13 80.5 54 74.1
COL.COLO4_24317 Corchorus olitorius HOM05D000068 ORTHO05D004505 1.3e-13 80.1 54 74.1
TPR.G1996 Trifolium pratense HOM05D000068 ORTHO05D004505 1.3e-13 80.1 54 74.1
HPP92_019346 Vanilla planifolia HOM05D000068 ORTHO05D004505 1.3e-13 80.1 54 72.2
arahy.Tifrunner.gnm1.ann1.6K2AQG Arachis hypogaea HOM05D000068 ORTHO05D004505 1.7e-13 79.7 54 74.1
arahy.Tifrunner.gnm1.ann1.ZGC9F0 Arachis hypogaea HOM05D000068 ORTHO05D004505 1.7e-13 79.7 54 74.1
BcaC02g09680 Brassica carinata HOM05D000068 ORTHO05D004505 1.7e-13 79.7 54 70.4
A04p11850 Brassica napus HOM05D000068 ORTHO05D004505 1.7e-13 79.7 54 70.4
C04p45520 Brassica napus HOM05D000068 ORTHO05D004505 1.7e-13 79.7 54 70.4
BolC4t26136H Brassica oleracea HOM05D000068 ORTHO05D004505 1.7e-13 79.7 54 70.4
BraA04t16851Z Brassica rapa HOM05D000068 ORTHO05D004505 1.7e-13 79.7 54 70.4
THA.LOC104822820 Tarenaya hassleriana HOM05D000068 ORTHO05D004505 1.7e-13 79.7 54 72.2
BcaB06g27263 Brassica carinata HOM05D000068 ORTHO05D004505 2.2e-13 79.3 54 70.4
Lalb_Chr13g0302771 Lupinus albus HOM05D000068 ORTHO05D004505 2.2e-13 79.3 54 74.1
Medtr4g109720 Medicago truncatula HOM05D000068 ORTHO05D004505 2.2e-13 79.3 54 74.1
TWI34G0290 Tripterygium wilfordii HOM05D000068 ORTHO05D004505 2.2e-13 79.3 54 72.2
Aqoxy3G00519 Aquilegia oxysepala HOM05D000068 ORTHO05D004505 2.9e-13 79.0 56 67.9
PGR004G2364 Punica granatum HOM05D000068 ORTHO05D004505 2.9e-13 79.0 56 69.6
QL02p067219 Quercus lobata HOM05D000068 ORTHO05D004505 2.9e-13 79.0 54 72.2
QL93p0053_1000 Quercus lobata HOM05D000068 ORTHO05D004505 2.9e-13 79.0 54 72.2
Aa31LG9G16750 Aethionema arabicum HOM05D000068 ORTHO05D004505 3.8e-13 78.6 54 70.4
Dinv34931 Davidia involucrata HOM05D000068 ORTHO05D004505 3.8e-13 78.6 54 72.2
Psat4g046360 Pisum sativum HOM05D000068 ORTHO05D004505 3.8e-13 78.6 54 72.2
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 5.0e-13 78.2 54 70.4
AL7G51410 Arabidopsis lyrata HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 70.4
AT5G39040 Arabidopsis thaliana HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 70.4
Carub.0007s3682 Capsella rubella HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 70.4
CAN.G1228.8 Capsicum annuum HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 70.4
Duzib187G1812 Durio zibethinus HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 70.4
Thhalv10027684m.g Eutrema salsugineum HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 70.4
Rhsim08G0075800 Rhododendron simsii HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 68.5
Sp7g02870 Schrenkiella parvula HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 70.4
Solyc03g114950.2 Solanum lycopersicum HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 70.4
Sopen03g034030 Solanum pennellii HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 70.4
PGSC0003DMG400024532 Solanum tuberosum HOM05D000068 ORTHO05D004505 6.5e-13 77.8 54 70.4
Actinidia17594 Actinidia chinensis HOM05D000068 ORTHO05D004505 8.5e-13 77.4 54 68.5
DCAR_011561 Daucus carota HOM05D000068 ORTHO05D004505 8.5e-13 77.4 56 66.1
Duzib264G0257 Durio zibethinus HOM05D000068 ORTHO05D004505 8.5e-13 77.4 54 70.4
ECA233G1111 Erigeron canadensis HOM05D000068 ORTHO05D004505 8.5e-13 77.4 54 68.5
CSS0006194 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004505 1.1e-12 77.0 54 70.4
CSS0036214 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004505 1.1e-12 77.0 54 70.4
Nitab4.5_0001580g0130 Nicotiana tabacum HOM05D000068 ORTHO05D004505 1.1e-12 77.0 54 68.5
Actinidia26258 Actinidia chinensis HOM05D000068 ORTHO05D004505 1.5e-12 76.6 54 68.5
Cc07_g04380 Coffea canephora HOM05D000068 ORTHO05D004505 1.5e-12 76.6 54 70.4
Lsat_1_v5_gn_8_42700 Lactuca sativa HOM05D000068 ORTHO05D004505 1.5e-12 76.6 54 70.4
CiPaw.03G087300 Carya illinoinensis HOM05D000068 ORTHO05D004505 1.9e-12 76.3 54 70.4
CiPaw.04G054100 Carya illinoinensis HOM05D000068 ORTHO05D004505 1.9e-12 76.3 54 70.4
ECA232G3845 Erigeron canadensis HOM05D000068 ORTHO05D004505 1.9e-12 76.3 54 68.5
HanXRQChr15g0489081 Helianthus annuus HOM05D000068 ORTHO05D004505 1.9e-12 76.3 54 70.4
Lsat_1_v5_gn_4_172260 Lactuca sativa HOM05D000068 ORTHO05D004505 1.9e-12 76.3 54 70.4
Thecc.04G098200 Theobroma cacao HOM05D000068 ORTHO05D004505 1.9e-12 76.3 54 68.5
CANSAT64G1179 Cannabis sativa HOM05D000068 ORTHO05D004505 2.5e-12 75.9 54 70.4
Cc00_g03450 Coffea canephora HOM05D000068 ORTHO05D004505 2.5e-12 75.9 54 68.5
Dinv17437 Davidia involucrata HOM05D000068 ORTHO05D004505 3.2e-12 75.5 49 77.6
HanXRQChr08g0212891 Helianthus annuus HOM05D000068 ORTHO05D004505 3.2e-12 75.5 54 68.5
Migut.K01263 Erythranthe guttata HOM05D000068 ORTHO05D004505 4.2e-12 75.1 56 66.1
Glyma.05G019400 Glycine max HOM05D000068 ORTHO05D004505 4.2e-12 75.1 85 52.9
Glyma.17G080400 Glycine max HOM05D000068 ORTHO05D004505 4.2e-12 75.1 85 52.9
Lj4g0022546 Lotus japonicus HOM05D000068 ORTHO05D004505 4.2e-12 75.1 54 70.4
Peaxi162Scf00201g00424 Petunia axillaris HOM05D000068 ORTHO05D004505 4.2e-12 75.1 54 70.4
vmacro18139 Vaccinium macrocarpon HOM05D000068 ORTHO05D004505 4.2e-12 75.1 54 66.7
EL10Ac5g11160 Beta vulgaris HOM05D000068 ORTHO05D004505 5.5e-12 74.7 54 68.5
CSS0027570 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004505 5.5e-12 74.7 56 66.1
Manes.02G056700 Manihot esculenta HOM05D000068 ORTHO05D004505 5.5e-12 74.7 54 68.5
Manes.02G057050 Manihot esculenta HOM05D000068 ORTHO05D004505 5.5e-12 74.7 54 68.5
Phvul.003G183200 Phaseolus vulgaris HOM05D000068 ORTHO05D004505 5.5e-12 74.7 85 52.9
VMungo1215G0543 Vigna mungo HOM05D000068 ORTHO05D004505 5.5e-12 74.7 85 52.9
AagrBONN_evm.TU.Sc2ySwM_117.1927 Anthoceros agrestis HOM05D000068 ORTHO05D004505 7.2e-12 74.3 85 51.8
Gohir.A05G381000 Gossypium hirsutum HOM05D000068 ORTHO05D004505 7.2e-12 74.3 56 64.3
Gohir.D04G034400 Gossypium hirsutum HOM05D000068 ORTHO05D004505 7.2e-12 74.3 56 64.3
Gorai.012G038700 Gossypium raimondii HOM05D000068 ORTHO05D004505 7.2e-12 74.3 56 64.3
Sabra17G0084600 Salix brachista HOM05D000068 ORTHO05D004505 7.2e-12 74.3 54 66.7
SabraUnG0001800 Salix brachista HOM05D000068 ORTHO05D004505 7.2e-12 74.3 54 66.7
Potri.017G097200 Populus trichocarpa HOM05D000068 ORTHO05D004505 9.4e-12 73.9 54 66.7
Duzib187G1839 Durio zibethinus HOM05D000068 ORTHO05D004505 1.2e-11 73.6 54 64.8
unitig_748.g8419 Utricularia gibba HOM05D000068 ORTHO05D004505 1.2e-11 73.6 54 68.5
Thecc.04G098000 Theobroma cacao HOM05D000068 ORTHO05D004505 1.6e-11 73.2 54 68.5
ATR0827G053 Amborella trichopoda HOM05D000068 ORTHO05D004505 2.1e-11 72.8 56 64.3
Eucgr.I02042 Eucalyptus grandis HOM05D000068 ORTHO05D004505 2.1e-11 72.8 56 64.3
Psat4g046400 Pisum sativum HOM05D000068 ORTHO05D004505 2.1e-11 72.8 54 66.7
Pp3c2_36840 Physcomitrium patens HOM05D000068 ORTHO05D004505 2.7e-11 72.4 56 62.5
Gorai.007G070500 Gossypium raimondii HOM05D000068 ORTHO05D004505 3.6e-11 72.0 54 63.0
Gohir.D11G065300 Gossypium hirsutum HOM05D000068 ORTHO05D004505 6.1e-11 71.2 54 61.1
Gohir.A11G061400 Gossypium hirsutum HOM05D000068 ORTHO05D004505 8.0e-11 70.9 54 61.1
Mapoly0075s0079 Marchantia polymorpha HOM05D000068 ORTHO05D004505 1.0e-10 70.5 81 48.1
CAN.G1194.5 Capsicum annuum HOM05D000068 ORTHO05D004505 1.4e-10 70.1 54 63.0
SMO134G0255 Selaginella moellendorffii HOM05D000068 ORTHO05D004505 1.4e-10 70.1 85 48.2
arahy.Tifrunner.gnm1.ann1.804MW9 Arachis hypogaea HOM05D000068 ORTHO05D004505 2.3e-10 69.3 53 67.9
arahy.Tifrunner.gnm1.ann1.E8UHBE Arachis hypogaea HOM05D000068 ORTHO05D026879 2.3e-10 69.3 53 67.9
COL.COLO4_02774 Corchorus olitorius HOM05D000068 ORTHO05D004505 2.3e-10 69.3 54 66.7
CSS0014152 Camellia sinensis var. sinensis HOM05D000068 ORTHO05D004505 4.0e-10 68.6 102 45.1
arahy.Tifrunner.gnm1.ann1.UD1J6F Arachis hypogaea HOM05D000068 ORTHO05D004505 1.2e-09 67.0 54 66.7
GSVIVG01032898001 Vitis vinifera HOM05D000068 ORTHO05D004505 1.2e-09 67.0 85 45.9
arahy.Tifrunner.gnm1.ann1.F32E1L Arachis hypogaea HOM05D000068 ORTHO05D026879 1.5e-09 66.6 53 66.0
unitig_32.g10756 Utricularia gibba HOM05D000068 ORTHO05D004505 3.4e-09 65.5 65 56.9
Duzib147G0173 Durio zibethinus HOM05D000068 ORTHO05D004505 5.7e-09 64.7 54 61.1
QL10p019992 Quercus lobata HOM05D000068 ORTHO05D004505 7.5e-09 64.3 85 48.2
MBI16_g10856_MAGBIO Magnolia biondii HOM05D000068 ORTHO05D004505 2.7e-06 55.8 42 66.7
Nitab4.5_0007160g0040 Nicotiana tabacum HOM05D000068 ORTHO05D004505 2.7e-06 55.8 54 55.6
CBR_g23255 Chara braunii HOM05D000068 ORTHO05D004505 7.7e-06 54.3 85 35.3
Nitab4.5_0001485g0050 Nicotiana tabacum HOM05D000068 ORTHO05D004505 7.7e-06 54.3 54 55.6


User provided reference genes

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