Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 1.1e-59 233.0 114 100.0
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 1.5e-48 196.1 98 94.9
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.6e-48 195.3 101 92.1
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 4.4e-48 194.5 98 92.9
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 5.8e-48 194.1 98 92.9
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.2e-47 192.2 98 92.9
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 3.7e-47 191.4 98 92.9
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 8.3e-47 190.3 98 92.9
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.9e-46 189.1 98 89.8
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 4.1e-46 188.0 98 89.8
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 4.1e-46 188.0 98 89.8
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 5.4e-46 187.6 98 90.8
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 2.0e-45 185.7 98 89.8
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.0e-44 183.3 100 83.0
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 1.7e-44 182.6 98 84.7
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 5.0e-44 181.0 98 84.7
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.9e-43 179.1 98 83.7
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.9e-43 179.1 98 83.7
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 2.1e-42 175.6 98 81.6
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 2.8e-42 175.3 98 81.6
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 1.8e-41 172.6 98 84.7
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 1.2e-40 169.9 99 80.8
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 1.2e-40 169.9 98 79.6
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 1.5e-40 169.5 97 80.4
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 2.0e-40 169.1 98 81.6
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 5.8e-40 167.5 97 78.4
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 9.2e-38 160.2 86 86.0
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 1.2e-37 159.8 102 74.5
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 2.7e-37 158.7 86 86.0
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 4.6e-37 157.9 86 87.2
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 4.6e-37 157.9 99 77.8
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 7.8e-37 157.1 99 77.8
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 7.8e-37 157.1 95 77.9
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 1.0e-36 156.8 95 77.9
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.3e-36 156.4 98 74.5
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 1.3e-36 156.4 95 77.9
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 3.0e-36 155.2 98 73.5
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 3.9e-36 154.8 95 74.7
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.9e-36 154.8 86 86.0
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 5.1e-36 154.5 98 73.5
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 6.6e-36 154.1 86 82.6
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 6.6e-36 154.1 100 74.0
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 1.1e-35 153.3 86 82.6
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.9e-35 152.5 98 71.4
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 3.3e-35 151.8 98 70.4
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 5.6e-35 151.0 98 69.4
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 7.3e-35 150.6 86 80.2
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 9.5e-35 150.2 98 69.4
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 1.6e-34 149.4 98 70.4
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.6e-34 149.4 98 70.4
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 1.6e-34 149.4 98 70.4
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 2.1e-34 149.1 98 71.4
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 3.6e-34 148.3 98 69.4
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 6.2e-34 147.5 98 65.3
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 8.1e-34 147.1 86 82.6
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 1.4e-33 146.4 100 72.0
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 2.3e-33 145.6 97 73.2
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 4.0e-33 144.8 98 67.3
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 5.2e-33 144.4 97 73.2
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 6.8e-33 144.1 98 72.4
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 6.8e-33 144.1 107 68.2
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.2e-32 143.3 98 69.4
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 2.0e-32 142.5 101 64.4
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 2.6e-32 142.1 98 70.4
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 2.6e-32 142.1 99 62.6
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 3.4e-32 141.7 98 73.5
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 7.6e-32 140.6 100 69.0
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 9.9e-32 140.2 98 66.3
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 1.7e-31 139.4 98 63.3
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 2.2e-31 139.0 107 66.4
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 2.9e-31 138.7 97 64.9
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 4.9e-31 137.9 98 69.4
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 6.4e-31 137.5 79 81.0
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 1.4e-30 136.3 86 75.6
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 7.1e-30 134.0 98 64.3
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 9.2e-30 133.7 86 72.1
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 1.2e-29 133.3 102 64.7
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 1.6e-29 132.9 99 65.7
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 4.6e-29 131.3 134 51.5
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 4.6e-29 131.3 99 65.7
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 6.0e-29 131.0 86 70.9
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 6.0e-29 131.0 98 68.4
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 7.8e-29 130.6 98 62.2
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 7.8e-29 130.6 99 62.6
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 1.0e-28 130.2 98 67.3
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 1.3e-28 129.8 98 63.3
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 2.3e-28 129.0 87 73.6
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 3.9e-28 128.3 84 70.2
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 6.6e-28 127.5 99 65.7
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.6e-26 122.9 102 62.7
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 2.8e-26 122.1 88 70.5
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 2.8e-26 122.1 100 58.0
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 2.8e-26 122.1 87 67.8
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 3.6e-26 121.7 86 66.3
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 3.6e-26 121.7 86 62.8
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.1e-25 120.2 94 60.6
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 6.9e-25 117.5 99 56.6
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 1.2e-24 116.7 101 57.4
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 2.6e-24 115.5 104 54.8
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 9.9e-24 113.6 105 53.3
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 1.7e-23 112.8 69 72.5
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 2.9e-23 112.1 89 60.7
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 3.8e-23 111.7 93 59.1
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 4.9e-23 111.3 102 54.9
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 6.4e-23 110.9 105 53.3
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.4e-22 109.8 86 61.6
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 1.9e-22 109.4 103 52.4
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 1.9e-22 109.4 100 51.0
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 1.9e-22 109.4 104 52.9
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.9e-22 109.4 75 70.7
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 2.4e-22 109.0 102 54.9
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 4.2e-22 108.2 105 56.2
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 7.1e-22 107.5 88 58.0
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 2.1e-21 105.9 104 51.9
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 4.6e-21 104.8 107 48.6
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 7.8e-21 104.0 109 47.7
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.0e-20 103.6 98 54.1
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 3.3e-19 98.6 83 57.8
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 1.1e-17 93.6 75 57.3
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 1.2e-16 90.1 60 73.3
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 1.2e-16 90.1 58 70.7
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 2.0e-16 89.4 82 53.7
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 2.9e-15 85.5 91 48.4
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 2.9e-15 85.5 91 48.4
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 5.4e-14 81.3 55 65.5
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 3.5e-13 78.6 55 63.6
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 6.0e-13 77.8 83 48.2
RcHm_v2.0_Chr1g0326231 Rosa chinensis HOM05D005781 ORTHO05D006835 8.7e-12 73.9 71 56.3
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 8.1e-10 67.4 77 42.9
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 8.1e-10 67.4 77 42.9
Lalb_Chr07g0188641 Lupinus albus HOM05D005781 ORTHO05D006835 1.1e-09 67.0 51 58.8
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 1.8e-09 66.2 53 50.9
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 1.2e-08 63.5 49 53.1
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 4.5e-08 61.6 62 45.2
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 5.8e-08 61.2 41 63.4
COL.COLO4_22630 Corchorus olitorius HOM05D005781 ORTHO05D006835 9.9e-08 60.5 33 84.8
Zm00001eb318190 Zea mays HOM05D000360 ORTHO05D006835 2.9e-07 58.9 43 60.5


User provided reference genes

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