Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G231900 Theobroma cacao HOM05D004691 ORTHO05D005552 2.3e-82 308.9 163 100.0
Gohir.A12G003900 Gossypium hirsutum HOM05D004691 ORTHO05D005552 4.4e-09 65.5 50 70.0
Glyma.07G180400 Glycine max HOM05D004691 ORTHO05D005552 1.1e-07 60.8 34 85.3
TPR.G11285 Trifolium pratense HOM05D004691 ORTHO05D005552 1.1e-07 60.8 34 85.3
TPR.G13465 Trifolium pratense HOM05D004691 ORTHO05D005552 1.1e-07 60.8 34 85.3
FvH4_2g23200 Fragaria vesca HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
FAN20G3100 Fragaria x ananassa HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
FAN24G2920 Fragaria x ananassa HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
FAN27G3192 Fragaria x ananassa HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
Lalb_Chr06g0162871 Lupinus albus HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
MD03G1261300 Malus domestica HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
MD11G1281700 Malus domestica HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
Prupe.1G577100 Prunus persica HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
Prupe.8G237600 Prunus persica HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
QL02p011400 Quercus lobata HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
RcHm_v2.0_Chr6g0290451 Rosa chinensis HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
TAR362G0310 Trochodendron aralioides HOM05D004691 ORTHO05D005552 1.4e-07 60.5 34 82.4
Ca_01504_v3 Cicer arietinum L. HOM05D004691 ORTHO05D005552 1.9e-07 60.1 34 82.4
Glyma.02G145800 Glycine max HOM05D004691 ORTHO05D005552 1.9e-07 60.1 34 82.4
Glyma.17G206800 Glycine max HOM05D004691 ORTHO05D005552 1.9e-07 60.1 34 82.4
Lj3A731T61 Lonicera japonica HOM05D004691 ORTHO05D005552 1.9e-07 60.1 34 82.4
Medtr1g047130 Medicago truncatula HOM05D004691 ORTHO05D005552 1.9e-07 60.1 34 82.4
TAR260G0003 Trochodendron aralioides HOM05D004691 ORTHO05D005552 1.9e-07 60.1 34 82.4
CANSAT25G2296 Cannabis sativa HOM05D004691 ORTHO05D005552 3.2e-07 59.3 34 82.4
MELO3C014296.2 Cucumis melo HOM05D004691 ORTHO05D005552 3.2e-07 59.3 34 82.4
CsaV3_2G013570 Cucumis sativus L. HOM05D004691 ORTHO05D005552 3.2e-07 59.3 34 82.4
Phvul.001G053600 Phaseolus vulgaris HOM05D004691 ORTHO05D005552 3.2e-07 59.3 34 82.4
Ah.10g032130 Amaranthus hybridus HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
CiPaw.08G107800 Carya illinoinensis HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
Cc08_g05170 Coffea canephora HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
DCAR_002717 Daucus carota HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
Lj2A1168T23 Lonicera japonica HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
Lj9A529T34 Lonicera japonica HOM05D004691 ORTHO05D005552 4.1e-07 58.9 32 81.2
Nitab4.5_0000108g0400 Nicotiana tabacum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
Nitab4.5_0003992g0020 Nicotiana tabacum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
PSO017G2306 Papaver somniferum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
PSO210G7297 Papaver somniferum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
PSO675G3171 Papaver somniferum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
PSO761G0020 Papaver somniferum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
Peaxi162Scf00408g00833 Petunia axillaris HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
PGR119G1056 Punica granatum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
PGR119G1812 Punica granatum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
RcHm_v2.0_Chr1g0329861 Rosa chinensis HOM05D004691 ORTHO05D005552 4.1e-07 58.9 43 67.4
RcHm_v2.0_Chr1g0329981 Rosa chinensis HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 82.4
SalBow4G0422 Salvia bowleyana HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
Sed0017796 Sechium edule HOM05D004691 ORTHO05D005552 4.1e-07 58.9 32 81.2
Sed0022085 Sechium edule HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
Sc17g0001280 Simmondsia chinensis HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
Solyc08g075850.3 Solanum lycopersicum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
Sopen08g024490 Solanum pennellii HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
PGSC0003DMG400017984 Solanum tuberosum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
PGSC0003DMG400030873 Solanum tuberosum HOM05D004691 ORTHO05D005552 4.1e-07 58.9 34 79.4
Aqoxy5G00433 Aquilegia oxysepala HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 79.4
EL10Ac2g03130 Beta vulgaris HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 76.5
EL10Ac4g08386 Beta vulgaris HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 76.5
EL10Ac4g08388 Beta vulgaris HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 76.5
CSS0029439 Camellia sinensis var. sinensis HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 79.4
CANSAT80G0426 Cannabis sativa HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 79.4
Cfa006171 Carpinus fangiana HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 79.4
AUR62018176 Chenopodium quinoa HOM05D004691 ORTHO05D005552 5.4e-07 58.5 37 73.0
Haze_24303 Corylus avellana HOM05D004691 ORTHO05D005552 5.4e-07 58.5 33 81.8
DCAR_018435 Daucus carota HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 79.4
Dinv32905 Davidia involucrata HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 79.4
Dinv34779 Davidia involucrata HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 79.4
ECA248G3453 Erigeron canadensis HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 76.5
Eucgr.K03344 Eucalyptus grandis HOM05D004691 ORTHO05D005552 5.4e-07 58.5 32 81.2
HanXRQChr01g0009931 Helianthus annuus HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 76.5
HanXRQChr08g0213401 Helianthus annuus HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 76.5
Hma1.2p1_0525F.1_g172750 Hydrangea macrophylla HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 79.4
Hma1.2p1_0667F.1_g199750 Hydrangea macrophylla HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 79.4
Lsat_1_v5_gn_5_187201 Lactuca sativa HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 76.5
Lsat_1_v5_gn_9_49380 Lactuca sativa HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 76.5
Nn1g02379 Nelumbo nucifera HOM05D004691 ORTHO05D005552 5.4e-07 58.5 34 79.4
Lj1g0022890 Lotus japonicus HOM05D004691 ORTHO05D005552 7.1e-07 58.2 34 82.4
Lj5g0022765 Lotus japonicus HOM05D004691 ORTHO05D005552 7.1e-07 58.2 34 82.4
Phvul.001G054100 Phaseolus vulgaris HOM05D004691 ORTHO05D005552 7.1e-07 58.2 34 79.4
Potri.004G062600 Populus trichocarpa HOM05D004691 ORTHO05D005552 7.1e-07 58.2 34 79.4
Thecc.01G274400 Theobroma cacao HOM05D004691 ORTHO05D005552 7.1e-07 58.2 34 79.4
GSVIVG01001184001 Vitis vinifera HOM05D004691 ORTHO05D005552 7.1e-07 58.2 32 78.1
CAN.G1427.9 Capsicum annuum HOM05D004691 ORTHO05D005552 9.2e-07 57.8 34 76.5
Duzib133G0007 Durio zibethinus HOM05D004691 ORTHO05D005552 9.2e-07 57.8 34 79.4
Duzib138G0407 Durio zibethinus HOM05D004691 ORTHO05D005552 9.2e-07 57.8 34 79.4
Gohir.D12G003600 Gossypium hirsutum HOM05D004691 ORTHO05D005552 9.2e-07 57.8 34 79.4
Gorai.008G003400 Gossypium raimondii HOM05D004691 ORTHO05D005552 9.2e-07 57.8 34 79.4
Manes.05G079200 Manihot esculenta HOM05D004691 ORTHO05D005552 9.2e-07 57.8 34 79.4
Sabra04G0041500 Salix brachista HOM05D004691 ORTHO05D005552 9.2e-07 57.8 34 79.4
SGA_v2.0_scaffold96G29067 Striga asiatica HOM05D004691 ORTHO05D005552 9.2e-07 57.8 32 81.2
arahy.Tifrunner.gnm1.ann1.DJ1VY2 Arachis hypogaea HOM05D004691 ORTHO05D005552 1.2e-06 57.4 34 82.4
AUR62038661 Chenopodium quinoa HOM05D004691 ORTHO05D005552 1.2e-06 57.4 33 78.8
Ciclev10022626m.g Citrus clementina HOM05D004691 ORTHO05D005552 1.2e-06 57.4 34 79.4
Migut.A00557 Erythranthe guttata HOM05D004691 ORTHO05D005552 1.2e-06 57.4 34 76.5
Gohir.D11G129800 Gossypium hirsutum HOM05D004691 ORTHO05D005552 1.2e-06 57.4 34 79.4
Gorai.007G138900 Gossypium raimondii HOM05D004691 ORTHO05D005552 1.2e-06 57.4 34 79.4
Nitab4.5_0002485g0080 Nicotiana tabacum HOM05D004691 ORTHO05D005552 1.2e-06 57.4 34 76.5
Rhsim13G0027100 Rhododendron simsii HOM05D004691 ORTHO05D005552 1.2e-06 57.4 34 76.5
Hund12255 Selenicereus undatus HOM05D004691 ORTHO05D005552 1.2e-06 57.4 32 78.1
TWI18G0899 Tripterygium wilfordii HOM05D004691 ORTHO05D005552 1.2e-06 57.4 34 73.5
TWI75G0960 Tripterygium wilfordii HOM05D004691 ORTHO05D005552 1.2e-06 57.4 34 73.5
vmacro02596 Vaccinium macrocarpon HOM05D004691 ORTHO05D005552 1.2e-06 57.4 34 76.5
Actinidia00785 Actinidia chinensis HOM05D004691 ORTHO05D005552 1.6e-06 57.0 34 76.5
arahy.Tifrunner.gnm1.ann1.3Q9Y1V Arachis hypogaea HOM05D004691 ORTHO05D005552 1.6e-06 57.0 34 79.4
Cpa.g.sc52.60 Carica papaya HOM05D004691 ORTHO05D005552 1.6e-06 57.0 34 79.4
CDE04G1639 Ceratophyllum demersum HOM05D004691 ORTHO05D005552 1.6e-06 57.0 34 76.5
ClCG07G000390 Citrullus lanatus HOM05D004691 ORTHO05D005552 1.6e-06 57.0 32 75.0
Oeu017325.1 Olea europaea HOM05D004691 ORTHO05D005552 1.6e-06 57.0 33 78.8
unitig_748.g8144 Utricularia gibba HOM05D004691 ORTHO05D005552 1.6e-06 57.0 34 76.5
HPP92_004579 Vanilla planifolia HOM05D004691 ORTHO05D005552 1.6e-06 57.0 34 76.5
VMungo0647G0910 Vigna mungo HOM05D004691 ORTHO05D005552 1.6e-06 57.0 34 76.5
ATR0787G203 Amborella trichopoda HOM05D004691 ORTHO05D005552 2.7e-06 56.2 34 76.5
COL.COLO4_11872 Corchorus olitorius HOM05D004691 ORTHO05D005552 2.7e-06 56.2 34 79.4
arahy.Tifrunner.gnm1.ann1.2S5JQC Arachis hypogaea HOM05D004691 ORTHO05D005552 7.8e-06 54.7 34 76.5
SalBow8G2642 Salvia bowleyana HOM05D004691 ORTHO05D005552 7.8e-06 54.7 34 73.5


User provided reference genes

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