Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G228300 Theobroma cacao HOM05D000347 ORTHO05D008062 2.8e-149 531.9 270 100.0
Gohir.A11G136100 Gossypium hirsutum HOM05D000347 ORTHO05D008062 2.8e-85 319.3 281 66.5
Gorai.007G152800 Gossypium raimondii HOM05D000347 ORTHO05D008062 3.1e-84 315.8 280 66.4
Gohir.D11G142500 Gossypium hirsutum HOM05D000347 ORTHO05D008062 6.9e-84 314.7 281 66.2
CiPaw.04G106800 Carya illinoinensis HOM05D000347 ORTHO05D000694 2.2e-77 293.1 275 61.5
RcHm_v2.0_Chr6g0285151 Rosa chinensis HOM05D000347 ORTHO05D008062 2.2e-74 283.1 291 58.4
Dinv19218 Davidia involucrata HOM05D000347 ORTHO05D008062 7.2e-73 278.1 288 57.3
Eucgr.H00807 Eucalyptus grandis HOM05D000347 ORTHO05D008062 4.7e-72 275.4 283 57.6
Prupe.8G205000 Prunus persica HOM05D000347 ORTHO05D000694 6.1e-72 275.0 274 60.6
Potri.002G240300 Populus trichocarpa HOM05D000347 ORTHO05D008062 5.1e-71 271.9 286 58.0
FAN15G1475 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.1e-70 270.8 290 56.2
GSVIVG01028561001 Vitis vinifera HOM05D000347 ORTHO05D008062 1.5e-70 270.4 262 58.4
Manes.12G042000 Manihot esculenta HOM05D000347 ORTHO05D008062 4.4e-70 268.9 289 57.4
MD10G1166700 Malus domestica HOM05D000347 ORTHO05D008062 5.7e-70 268.5 291 55.3
FvH4_2g19360 Fragaria vesca HOM05D000347 ORTHO05D008062 7.4e-70 268.1 291 56.0
MD05G1178500 Malus domestica HOM05D000347 ORTHO05D008062 1.4e-68 263.8 291 55.3
Hma1.2p1_0351F.1_g132820 Hydrangea macrophylla HOM05D000347 ORTHO05D008062 2.4e-68 263.1 266 57.9
FAN24G2098 Fragaria x ananassa HOM05D000347 ORTHO05D000694 1.5e-67 260.4 274 57.3
FAN27G2014 Fragaria x ananassa HOM05D000347 ORTHO05D008062 4.5e-67 258.8 283 55.1
Phvul.008G123300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 4.0e-63 245.7 289 52.9
Ciclev10021356m.g Citrus clementina HOM05D000347 ORTHO05D008062 8.2e-61 238.0 302 52.3
Cc01_g17250 Coffea canephora HOM05D000347 ORTHO05D008062 7.0e-60 235.0 300 53.7
Glyma.08G356200 Glycine max HOM05D000347 ORTHO05D008062 1.2e-59 234.2 287 53.3
Gohir.A08G194000 Gossypium hirsutum HOM05D000347 ORTHO05D008062 1.6e-59 233.8 291 52.6
Gorai.004G225100 Gossypium raimondii HOM05D000347 ORTHO05D008062 1.6e-59 233.8 290 53.8
TWI18G0408 Tripterygium wilfordii HOM05D000347 ORTHO05D008062 2.6e-59 233.0 346 46.2
Gohir.D08G211800 Gossypium hirsutum HOM05D000347 ORTHO05D008062 3.5e-59 232.6 291 53.3
PGR083G0949 Punica granatum HOM05D000347 ORTHO05D008062 4.5e-59 232.3 282 53.5
Glyma.18G173300 Glycine max HOM05D000347 ORTHO05D008062 5.9e-59 231.9 290 52.1
Lj1g0023077 Lotus japonicus HOM05D000347 ORTHO05D008062 7.7e-59 231.5 280 51.1
VMungo1383G0854 Vigna mungo HOM05D000347 ORTHO05D008062 1.3e-58 230.7 285 50.9
Migut.D00520 Erythranthe guttata HOM05D000347 ORTHO05D008062 2.9e-58 229.6 294 51.4
Sabra02G0183100 Salix brachista HOM05D000347 ORTHO05D008062 3.8e-58 229.2 257 55.6
CSS0034279 Camellia sinensis var. sinensis HOM05D000347 ORTHO05D008062 2.5e-57 226.5 186 66.7
QL09p044668 Quercus lobata HOM05D000347 ORTHO05D008062 9.4e-57 224.6 185 68.6
Nn1g07779 Nelumbo nucifera HOM05D000347 ORTHO05D008062 1.2e-56 224.2 296 48.0
MSTRG.21431 Avicennia marina HOM05D000347 ORTHO05D008062 1.4e-55 220.7 287 49.5
Cpa.g.sc8.175 Carica papaya HOM05D000347 ORTHO05D008062 8.8e-55 218.0 299 49.5
TAR636G2566 Trochodendron aralioides HOM05D000347 ORTHO05D008062 7.5e-54 214.9 288 48.6
Medtr0027s0180 Medicago truncatula HOM05D000347 ORTHO05D008062 4.8e-53 212.2 225 55.6
CsaV3_3G028770 Cucumis sativus L. HOM05D000347 ORTHO05D008062 3.1e-52 209.5 288 47.2
Actinidia37581 Actinidia chinensis HOM05D000347 ORTHO05D008062 7.0e-52 208.4 184 64.7
Solyc09g061715.1 Solanum lycopersicum HOM05D000347 ORTHO05D008062 2.7e-51 206.5 273 50.9
Sopen09g024710 Solanum pennellii HOM05D000347 ORTHO05D008062 2.7e-51 206.5 273 50.9
TAR365G0021 Trochodendron aralioides HOM05D000347 ORTHO05D008062 7.7e-51 204.9 301 44.5
Actinidia23733 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.7e-50 203.8 284 47.9
Nitab4.5_0000866g0010 Nicotiana tabacum HOM05D000347 ORTHO05D008062 5.0e-50 202.2 285 50.2
TPR.G15284 Trifolium pratense HOM05D000347 ORTHO05D008062 3.2e-49 199.5 286 47.2
Sed0024927 Sechium edule HOM05D000901 ORTHO05D008062 9.4e-49 198.0 289 46.7
TAR365G1261 Trochodendron aralioides HOM05D000347 ORTHO05D008062 1.2e-48 197.6 314 43.0
CANSAT01G0926 Cannabis sativa HOM05D000347 ORTHO05D008062 2.7e-48 196.4 314 45.2
CiPaw.03G151400 Carya illinoinensis HOM05D000347 ORTHO05D008062 2.7e-48 196.4 183 62.3
Aqoxy2G03776 Aquilegia oxysepala HOM05D000347 ORTHO05D008062 3.0e-47 193.0 287 44.6
SGA_v2.0_scaffold1G00715 Striga asiatica HOM05D000347 ORTHO05D008062 5.2e-47 192.2 284 47.2
ClCG07G001810 Citrullus lanatus HOM05D006129 ORTHO05D007446 8.8e-47 191.4 282 45.7
Haze_24776 Corylus avellana HOM05D000347 ORTHO05D008062 9.8e-46 188.0 192 59.4
Oeu018505.1 Olea europaea HOM05D000879 ORTHO05D002043 1.3e-45 187.6 181 59.1
Actinidia30090 Actinidia chinensis HOM05D000347 ORTHO05D008062 1.4e-44 184.1 184 60.9
Sopen06g034940 Solanum pennellii HOM05D000347 ORTHO05D008062 1.8e-44 183.7 285 45.6
Ca_07542_v3 Cicer arietinum L. HOM05D000347 ORTHO05D008062 3.1e-44 183.0 184 54.9
PGSC0003DMG400020089 Solanum tuberosum HOM05D007853 ORTHO05D009873 1.3e-42 177.6 282 44.7
SalBow4G1846 Salvia bowleyana HOM05D000347 ORTHO05D008062 2.3e-42 176.8 181 60.2
Sed0024241 Sechium edule HOM05D000347 ORTHO05D008062 2.9e-42 176.4 268 45.1
Lalb_Chr01g0022451 Lupinus albus HOM05D000347 ORTHO05D008062 5.0e-42 175.6 286 43.0
Psat3g142320 Pisum sativum HOM05D000347 ORTHO05D008062 5.0e-42 175.6 281 44.1
Rhsim13G0044000 Rhododendron simsii HOM05D000347 ORTHO05D008062 6.6e-42 175.3 181 58.6
Medtr7g059080 Medicago truncatula HOM05D000347 ORTHO05D008062 3.3e-41 172.9 164 61.0
Solyc06g083560.3 Solanum lycopersicum HOM05D000347 ORTHO05D008062 5.6e-41 172.2 287 44.3
MELO3C018065.2 Cucumis melo HOM05D000347 ORTHO05D008062 1.6e-40 170.6 185 56.8
Glyma.16G094000 Glycine max HOM05D000347 ORTHO05D008062 4.0e-39 166.0 287 39.4
HanXRQChr01g0014681 Helianthus annuus HOM05D000347 ORTHO05D008062 8.9e-39 164.9 186 55.4
Lalb_Chr03g0041901 Lupinus albus HOM05D000347 ORTHO05D008062 1.5e-38 164.1 238 45.8
arahy.Tifrunner.gnm1.ann1.W0YDFD Arachis hypogaea HOM05D000347 ORTHO05D008062 2.0e-38 163.7 296 40.9
Peaxi162Scf02141g00004 Petunia axillaris HOM05D000347 ORTHO05D008062 4.9e-37 159.1 183 52.5
vmacro02746 Vaccinium macrocarpon HOM05D000347 ORTHO05D008062 3.9e-34 149.4 181 52.5
Peaxi162Scf00517g00428 Petunia axillaris HOM05D000347 ORTHO05D008062 1.2e-32 144.4 244 43.0
PGSC0003DMG400003422 Solanum tuberosum HOM05D000347 ORTHO05D008062 1.6e-32 144.1 180 52.2
arahy.Tifrunner.gnm1.ann1.54FW37 Arachis hypogaea HOM05D000347 ORTHO05D008062 8.0e-32 141.7 236 40.7
AUR62031831 Chenopodium quinoa HOM05D000347 ORTHO05D008062 8.0e-32 141.7 195 48.7
Lsat_1_v5_gn_5_179760 Lactuca sativa HOM05D000347 ORTHO05D008062 1.4e-31 141.0 189 49.2
Lj3g0009150 Lotus japonicus HOM05D000347 ORTHO05D008062 5.4e-28 129.0 276 39.9
Nitab4.5_0003790g0070 Nicotiana tabacum HOM05D000347 ORTHO05D008062 2.0e-27 127.1 116 62.9
Nn3g19918 Nelumbo nucifera HOM05D000347 ORTHO05D008062 1.0e-26 124.8 178 43.3
VMungo0331G1006 Vigna mungo HOM05D000347 ORTHO05D008062 1.3e-26 124.4 278 35.3
Phvul.010G019300 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 1.9e-25 120.6 280 33.6
DCAR_018551 Daucus carota HOM05D000347 ORTHO05D008062 3.3e-25 119.8 272 37.1
Medtr0027s0200 Medicago truncatula HOM05D000347 ORTHO05D008062 5.6e-25 119.0 182 45.1
Carub.0003s2514 Capsella rubella HOM05D011699 ORTHO05D008062 1.6e-24 117.5 293 36.9
Atru.chr5.2056 Acer truncatum HOM05D000347 ORTHO05D008062 2.8e-24 116.7 113 55.8
DCAR_004713 Daucus carota HOM05D000347 ORTHO05D008062 6.2e-24 115.5 183 45.9
Sc05g0002410 Simmondsia chinensis HOM05D000347 ORTHO05D008062 8.1e-24 115.2 296 34.1
Ah.08g214040 Amaranthus hybridus HOM05D000901 ORTHO05D008062 1.8e-23 114.0 257 36.6
Phvul.010G019000 Phaseolus vulgaris HOM05D000347 ORTHO05D008062 6.8e-23 112.1 218 36.2
AL3G40480 Arabidopsis lyrata HOM05D011699 ORTHO05D008062 2.0e-22 110.5 288 33.3
Nitab4.5_0002085g0080 Nicotiana tabacum HOM05D000347 ORTHO05D008062 4.4e-22 109.4 247 36.8
AUR62008877 Chenopodium quinoa HOM05D000347 ORTHO05D008062 5.8e-22 109.0 267 33.3
MBI07_g21075_MAGBIO Magnolia biondii HOM05D000347 ORTHO05D008062 6.4e-21 105.5 181 43.1
BcaC06g35749 Brassica carinata HOM05D011699 ORTHO05D008062 1.2e-19 101.3 278 33.1
A07p07520 Brassica napus HOM05D011699 ORTHO05D008062 1.2e-19 101.3 279 33.3
BraA07t28543Z Brassica rapa HOM05D011699 ORTHO05D008062 1.2e-19 101.3 279 33.3
AT3G24750 Arabidopsis thaliana HOM05D011699 ORTHO05D008062 1.6e-19 100.9 279 33.7
BcaB06g26692 Brassica carinata HOM05D011699 ORTHO05D008062 1.6e-19 100.9 279 34.4
C07p11290 Brassica napus HOM05D011699 ORTHO05D008062 4.6e-19 99.4 285 31.9
BolC7t41607H Brassica oleracea HOM05D011699 ORTHO05D008062 6.0e-19 99.0 280 32.5
Sc24g0003600 Simmondsia chinensis HOM05D000347 ORTHO05D008062 2.3e-18 97.1 149 44.3
Sp3g22490 Schrenkiella parvula HOM05D011699 ORTHO05D008062 3.3e-17 93.2 283 33.2
THA.LOC104821644 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 4.3e-17 92.8 192 40.6
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 4.0e-15 86.3 139 41.7
Thhalv10002691m.g Eutrema salsugineum HOM05D011699 ORTHO05D008062 2.6e-14 83.6 149 45.0
CARHR101080 Cardamine hirsuta HOM05D011699 ORTHO05D008062 4.4e-14 82.8 287 31.4
PSO017G1362 Papaver somniferum HOM05D000347 ORTHO05D008062 1.3e-13 81.3 226 37.2
Oeu058867.1 Olea europaea HOM05D000347 ORTHO05D008062 6.4e-13 79.0 82 58.5
SalBow2G2623 Salvia bowleyana HOM05D000347 ORTHO05D008062 1.4e-12 77.8 278 30.2
PSO063G6109 Papaver somniferum HOM05D000347 ORTHO05D008062 5.4e-12 75.9 230 34.8
EL10Ac7g17790 Beta vulgaris HOM05D000347 ORTHO05D008062 7.8e-11 72.0 235 28.9
THA.LOC104804603 Tarenaya hassleriana HOM05D000347 ORTHO05D008062 3.0e-10 70.1 291 29.9
ECA248G1409 Erigeron canadensis HOM05D000102 ORTHO05D000138 1.9e-09 67.4 76 50.0
Zm00001eb379630 Zea mays HOM05D042818 ORTHO05D008062 2.8e-08 63.5 188 34.0
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 5.2e-07 59.3 198 30.8


User provided reference genes

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