Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 1.6e-299 1031.9 516 100.0
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 2.1e-259 898.7 516 87.4
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 2.5e-247 858.6 516 83.5
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 4.6e-246 854.4 516 83.1
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 3.0e-245 851.7 525 82.3
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 4.7e-230 801.2 571 74.3
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 8.1e-174 614.4 517 62.7
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 7.8e-169 597.8 521 61.8
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 2.3e-168 596.3 521 61.6
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 2.5e-167 592.8 519 60.3
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 3.3e-167 592.4 519 60.7
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 6.2e-166 588.2 524 62.0
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 1.1e-165 587.4 527 60.5
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 1.3e-163 580.5 521 59.9
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 2.4e-162 576.2 521 59.7
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 3.5e-161 572.4 534 60.3
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 4.6e-161 572.0 527 58.4
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 1.7e-155 553.5 519 58.0
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 1.9e-154 550.1 603 53.7
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 4.6e-153 545.4 519 56.8
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 1.3e-152 543.9 519 58.0
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 3.0e-152 542.7 518 58.7
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 6.2e-150 535.0 483 60.0
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.5e-148 530.4 528 54.4
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 7.6e-148 528.1 520 56.9
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 2.4e-146 523.1 520 52.9
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 2.1e-145 520.0 450 59.8
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 1.0e-144 517.7 520 55.2
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 2.5e-143 513.1 518 54.1
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 1.1e-141 507.7 518 53.1
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.8e-141 506.9 520 54.6
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.8e-141 506.9 573 51.8
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 4.9e-139 498.8 520 54.0
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 4.9e-139 498.8 518 52.1
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.9e-138 496.9 525 52.6
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 1.9e-138 496.9 522 52.7
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 4.2e-138 495.7 523 53.3
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 2.7e-137 493.0 519 52.2
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 1.0e-136 491.1 519 52.4
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 5.1e-136 488.8 526 52.1
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 8.7e-136 488.0 520 52.5
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 1.9e-135 486.9 521 53.2
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 4.3e-135 485.7 521 51.8
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 5.7e-135 485.3 518 52.5
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-134 484.2 457 56.2
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 2.8e-134 483.0 522 52.9
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 1.4e-133 480.7 556 48.6
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 2.4e-133 479.9 521 51.8
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 6.9e-133 478.4 449 57.5
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 6.9e-133 478.4 516 51.4
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 9.0e-133 478.0 518 52.7
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 1.2e-132 477.6 524 52.9
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 5.9e-132 475.3 526 52.5
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 3.2e-130 469.5 449 55.9
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 4.2e-130 469.2 520 49.0
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 5.5e-130 468.8 488 53.1
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 1.6e-129 467.2 448 56.2
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 1.8e-128 463.8 522 50.2
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 2.0e-127 460.3 448 55.1
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.0e-127 460.3 484 52.1
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.3e-127 459.5 484 52.1
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 4.3e-127 459.1 448 55.1
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 5.7e-127 458.8 448 55.1
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 7.4e-127 458.4 447 55.5
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 2.2e-126 456.8 448 53.8
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.8e-125 453.8 446 54.9
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 9.1e-125 451.4 510 48.8
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.2e-124 451.1 460 52.2
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 1.2e-124 451.1 522 50.2
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 1.5e-124 450.7 515 48.3
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 3.4e-124 449.5 493 51.3
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 8.5e-123 444.9 489 49.5
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 1.4e-122 444.1 446 54.0
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-122 444.1 446 54.0
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 2.5e-122 443.4 517 49.7
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 2.7e-121 439.9 520 49.8
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 3.6e-121 439.5 445 54.2
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 6.7e-120 435.3 465 50.3
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 2.0e-119 433.7 520 49.2
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 2.6e-119 433.3 520 46.9
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 4.8e-118 429.1 524 45.8
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 8.2e-118 428.3 426 52.1
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 4.5e-116 422.5 433 52.2
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 5.0e-115 419.1 521 48.0
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 3.2e-114 416.4 470 49.6
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 1.6e-113 414.1 453 50.6
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.0e-112 411.4 610 43.0
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.8e-112 410.6 353 60.3
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 2.6e-111 406.8 497 46.3
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 3.3e-111 406.4 489 44.0
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 3.8e-107 392.9 521 45.1
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 3.2e-106 389.8 524 40.6
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 1.0e-104 384.8 371 52.8
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 5.0e-99 365.9 395 51.4
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 3.6e-97 359.8 369 49.1
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.1e-93 346.7 305 59.3
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.2e-92 344.7 437 43.7
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 3.6e-89 333.2 378 47.6
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 4.9e-86 322.8 453 43.0
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.7e-78 297.7 209 71.3
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 3.0e-75 287.0 440 38.4
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 8.9e-72 275.4 318 49.7
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 1.3e-70 271.6 523 38.2
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.6e-59 232.3 283 46.3
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 1.1e-58 231.9 192 62.5
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 9.9e-55 218.8 337 39.8
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-54 218.4 305 43.6
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 1.1e-53 215.3 450 32.4
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 7.8e-52 209.1 463 33.3
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 1.6e-49 201.4 432 34.0
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 1.2e-47 195.3 496 29.6
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 2.6e-47 194.1 142 67.6
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.8e-46 190.3 264 45.5
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 4.6e-44 183.3 235 43.8
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 1.3e-43 181.8 309 36.6
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 3.0e-43 180.6 268 41.4
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.5e-34 151.0 125 63.2
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 7.4e-34 149.4 119 63.9
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 8.1e-33 146.0 141 51.1
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.4e-29 135.2 132 53.8
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 1.4e-24 118.6 145 45.5
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.0e-15 88.2 108 43.5
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 3.4e-15 87.4 141 38.3
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 3.8e-14 84.0 270 29.6
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.5e-14 83.2 96 43.8
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 2.0e-10 71.6 77 49.4
Haze_05914 Corylus avellana HOM05D006020 ORTHO05D007665 1.3e-09 68.9 103 40.8
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 6.3e-09 66.6 67 50.7
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 1.0e-06 59.3 67 44.8
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 1.3e-06 58.9 160 28.8


User provided reference genes

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