Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 2.1e-163 578.9 285 100.0
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.3e-77 293.9 201 75.6
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 1.0e-53 214.5 198 54.0
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 1.3e-48 197.6 180 55.6
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 6.0e-46 188.7 206 47.1
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 1.1e-44 184.5 197 48.2
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.9e-44 183.7 200 48.5
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.0e-41 173.7 206 46.6
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.6e-41 173.3 220 44.5
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 3.8e-40 169.5 184 48.4
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.7e-35 154.1 229 38.9
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 7.9e-30 135.2 192 41.1
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.8e-29 134.0 359 29.8
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 1.8e-29 134.0 114 58.8
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 2.3e-29 133.7 188 41.0
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 3.9e-29 132.9 183 42.1
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 3.9e-29 132.9 188 43.1
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.1e-28 131.3 199 39.7
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 1.5e-28 131.0 188 41.5
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 3.3e-28 129.8 191 41.4
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 3.3e-28 129.8 191 40.8
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 4.4e-28 129.4 183 41.0
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 4.4e-28 129.4 198 41.4
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 7.4e-28 128.6 187 42.2
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 7.4e-28 128.6 187 42.2
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 1.3e-27 127.9 191 40.3
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 1.7e-27 127.5 186 40.3
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 2.2e-27 127.1 191 40.3
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.2e-27 127.1 187 42.8
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.8e-27 126.7 187 41.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.7e-27 126.3 187 41.2
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.7e-27 126.3 179 44.7
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 4.8e-27 125.9 204 38.7
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 4.8e-27 125.9 190 38.9
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 4.8e-27 125.9 183 41.5
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 8.2e-27 125.2 183 39.3
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 8.2e-27 125.2 183 39.3
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 8.2e-27 125.2 186 40.9
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 1.1e-26 124.8 192 38.5
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.1e-26 124.8 190 39.5
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.4e-26 124.4 183 40.4
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 1.8e-26 124.0 291 34.0
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.8e-26 124.0 197 39.6
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.8e-26 124.0 186 40.9
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.8e-26 124.0 191 39.8
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 3.1e-26 123.2 191 40.8
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 3.1e-26 123.2 186 40.3
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 4.1e-26 122.9 190 41.1
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 4.1e-26 122.9 183 42.1
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 5.3e-26 122.5 190 40.0
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 5.3e-26 122.5 186 39.8
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 7.0e-26 122.1 228 38.6
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 7.0e-26 122.1 195 41.0
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 7.0e-26 122.1 190 39.5
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 9.1e-26 121.7 230 37.0
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 9.1e-26 121.7 191 39.8
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 9.1e-26 121.7 184 41.3
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 9.1e-26 121.7 189 39.7
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 9.1e-26 121.7 189 39.7
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 9.1e-26 121.7 187 38.5
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 9.1e-26 121.7 222 35.6
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.2e-25 121.3 204 38.2
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.2e-25 121.3 189 40.2
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.5e-25 120.9 189 40.7
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.5e-25 120.9 187 40.1
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 1.5e-25 120.9 183 40.4
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.5e-25 120.9 225 37.8
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 2.0e-25 120.6 189 39.2
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.6e-25 120.2 187 40.1
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.6e-25 120.2 196 36.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 3.5e-25 119.8 186 38.7
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.5e-25 119.8 191 40.8
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 3.5e-25 119.8 183 41.5
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 3.5e-25 119.8 193 39.9
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 3.5e-25 119.8 183 42.6
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.5e-25 119.4 184 40.2
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 5.9e-25 119.0 226 32.7
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 7.7e-25 118.6 187 41.2
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.0e-24 118.2 213 36.6
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.0e-24 118.2 186 39.2
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.0e-24 118.2 212 36.3
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 1.3e-24 117.9 205 37.6
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 1.3e-24 117.9 186 38.7
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 1.7e-24 117.5 188 39.4
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.2e-24 117.1 193 39.4
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 2.2e-24 117.1 183 39.9
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.9e-24 116.7 186 38.2
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 2.9e-24 116.7 195 39.0
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 3.8e-24 116.3 205 35.6
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 3.8e-24 116.3 212 34.9
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 6.5e-24 115.5 186 38.7
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 8.5e-24 115.2 192 38.5
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.5e-24 115.2 204 36.8
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 1.1e-23 114.8 187 38.5
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.4e-23 114.4 190 39.5
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 1.9e-23 114.0 186 39.8
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 1.9e-23 114.0 186 39.8
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.9e-23 114.0 184 40.2
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.9e-23 114.0 187 40.1
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 2.5e-23 113.6 187 38.5
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 2.5e-23 113.6 185 41.1
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 3.2e-23 113.2 192 36.5
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.2e-23 113.2 184 39.1
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.2e-23 113.2 185 40.0
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 3.2e-23 113.2 188 38.8
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 4.2e-23 112.8 192 35.9
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 4.2e-23 112.8 192 35.9
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 4.2e-23 112.8 192 35.9
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 4.2e-23 112.8 192 35.9
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 4.2e-23 112.8 188 38.3
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 7.2e-23 112.1 198 37.9
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 7.2e-23 112.1 187 36.9
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 9.4e-23 111.7 183 36.6
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 1.2e-22 111.3 185 39.5
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 1.2e-22 111.3 187 36.9
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 1.6e-22 110.9 187 36.4
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.6e-22 110.9 185 39.5
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 1.6e-22 110.9 192 35.4
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 2.7e-22 110.2 191 35.6
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 2.7e-22 110.2 204 36.8
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.7e-22 110.2 188 37.2
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 3.6e-22 109.8 180 40.6
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 8.0e-22 108.6 204 34.3
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 1.4e-21 107.8 203 33.5
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.4e-21 107.8 184 38.0
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 2.3e-21 107.1 197 35.5
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 2.3e-21 107.1 177 39.5
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 6.7e-21 105.5 203 33.0
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.1e-20 104.8 185 37.8
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 9.7e-20 101.7 143 42.0
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.3e-19 101.3 191 37.7
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 2.8e-19 100.1 180 34.4
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 6.3e-19 99.0 147 42.9
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 8.2e-19 98.6 183 34.4
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 8.2e-19 98.6 161 37.9
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 8.2e-19 98.6 183 34.4
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 1.8e-18 97.4 172 34.9
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.8e-18 97.4 181 33.7
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.1e-18 96.7 145 42.1
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 1.6e-17 94.4 147 42.2
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 3.5e-17 93.2 136 41.9
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 6.5e-16 89.0 190 32.1
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 1.1e-15 88.2 150 39.3
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 1.9e-15 87.4 178 35.4
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 3.2e-15 86.7 159 36.5
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 4.2e-15 86.3 128 40.6
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 2.3e-13 80.5 161 36.0
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 1.5e-12 77.8 180 31.1
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 5.7e-12 75.9 170 32.9
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 5.7e-12 75.9 164 35.4
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 6.3e-11 72.4 164 32.9
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 1.8e-10 70.9 162 34.0
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 7.0e-10 68.9 75 48.0
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 2.5e-07 60.5 56 51.8
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.6e-06 57.8 46 52.2
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 3.6e-06 56.6 36 66.7
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.7e-06 56.2 59 49.2
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 6.1e-06 55.8 158 27.8
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 8.0e-06 55.5 39 59.0


User provided reference genes

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