Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 0.0e+00 1674.4 869 100.0
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 0.0e+00 1270.8 1025 66.8
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 0.0e+00 1167.1 909 66.4
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 0.0e+00 1161.7 909 66.3
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 0.0e+00 1145.2 909 65.8
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 2.0e-286 989.2 859 58.0
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 1.1e-279 966.8 870 59.7
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 4.0e-274 948.3 877 57.1
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 4.0e-274 948.3 917 56.5
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 6.3e-272 941.0 886 60.9
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 3.3e-268 928.7 873 58.0
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.1e-263 913.7 890 56.2
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 5.0e-261 904.8 879 55.3
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 1.5e-260 903.3 951 54.6
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 3.6e-259 898.7 857 54.5
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 4.6e-246 855.1 759 58.6
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 1.2e-238 830.5 865 50.8
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.1e-238 829.7 1014 47.8
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 1.5e-236 823.5 1026 48.8
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 3.4e-233 812.4 876 50.1
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 2.4e-231 806.2 1024 46.9
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 4.2e-231 805.4 887 51.3
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 5.1e-229 798.5 893 51.4
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 1.1e-228 797.3 995 49.0
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 1.5e-228 797.0 896 48.9
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 3.3e-228 795.8 866 53.1
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 7.3e-228 794.7 1090 45.8
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 7.6e-225 784.6 1058 44.4
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 1.7e-224 783.5 873 50.7
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 3.8e-224 782.3 873 49.8
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.4e-223 780.4 922 48.0
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 1.6e-222 776.9 854 51.6
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 6.0e-222 775.0 883 49.3
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 8.7e-221 771.2 871 49.7
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 2.5e-220 769.6 870 49.7
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 4.8e-219 765.4 869 48.4
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 4.8e-219 765.4 868 50.0
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 8.1e-219 764.6 870 49.4
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 4.0e-218 762.3 888 49.3
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 9.0e-218 761.1 964 44.4
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.3e-216 757.3 722 56.4
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 1.3e-216 757.3 878 48.4
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 1.7e-216 756.9 948 47.3
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 1.7e-216 756.9 858 49.7
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.7e-216 756.9 884 49.4
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 1.4e-215 753.8 864 48.5
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 3.2e-215 752.7 867 48.4
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 1.6e-214 750.4 870 48.0
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 1.6e-214 750.4 870 48.0
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 3.9e-213 745.7 968 47.1
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 1.3e-211 740.7 889 47.2
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 1.4e-210 737.3 891 47.7
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 3.1e-210 736.1 1074 42.2
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 2.9e-208 729.6 1069 42.2
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 2.5e-207 726.5 942 45.3
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 2.1e-206 723.4 1082 44.2
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 1.1e-204 717.6 1051 42.7
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 2.8e-203 713.0 903 47.8
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 3.7e-203 712.6 1100 38.5
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 6.3e-203 711.8 900 45.4
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.0e-201 706.8 932 43.5
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 2.0e-201 706.8 932 43.5
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 2.0e-201 706.8 1028 41.8
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 5.0e-200 702.2 949 42.4
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 2.5e-199 699.9 861 45.9
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.2e-198 697.6 851 47.0
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 1.2e-198 697.6 1019 40.9
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 2.7e-198 696.4 749 51.3
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 2.7e-198 696.4 923 43.0
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.6e-198 696.0 1070 40.2
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 7.4e-196 688.3 926 43.4
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 1.3e-195 687.6 906 44.8
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 2.8e-195 686.4 952 41.7
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.7e-195 686.0 986 40.8
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 1.1e-194 684.5 906 44.3
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 3.1e-194 682.9 1071 41.6
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.2e-193 681.0 990 41.4
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 2.0e-193 680.2 1023 39.0
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 9.4e-191 671.4 858 46.7
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 9.4e-191 671.4 1046 43.8
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 6.1e-190 668.7 1056 40.0
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 2.6e-188 663.3 1014 39.3
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 2.8e-187 659.8 924 41.9
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 8.2e-187 658.3 1151 38.7
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 1.5e-185 654.1 896 45.8
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 7.2e-183 645.2 920 40.7
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 3.6e-182 642.9 868 44.5
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 1.8e-181 640.6 578 55.7
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 6.7e-181 638.6 920 43.7
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.4e-180 635.2 1105 40.4
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 1.7e-179 634.0 717 50.2
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 7.0e-178 628.6 1049 41.8
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 3.0e-173 613.2 868 43.1
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 7.5e-172 608.6 1009 39.1
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 7.0e-170 602.1 633 53.7
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 2.7e-169 600.1 862 45.0
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 6.1e-166 589.0 1073 39.1
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.7e-163 579.7 814 44.6
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 8.6e-160 568.5 646 51.2
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 8.6e-152 542.0 933 42.1
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 2.3e-149 533.9 1186 31.5
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.5e-148 531.2 862 35.8
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 3.5e-145 520.0 646 51.7
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.3e-144 517.3 811 42.5
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 1.8e-141 507.7 684 48.2
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 2.4e-138 497.3 854 35.7
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 3.0e-128 463.8 670 41.2
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.5e-124 451.4 327 67.9
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.0e-120 438.7 381 55.9
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 1.5e-119 434.9 494 44.7
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 8.4e-107 392.5 423 47.0
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 4.6e-105 386.7 846 31.1
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 2.8e-102 377.5 807 30.5
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 1.8e-101 374.8 851 31.3
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 9.0e-93 345.9 294 58.2
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 2.7e-81 307.8 542 40.2
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 1.3e-70 272.3 387 45.7
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 4.5e-68 263.8 303 48.2
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 7.2e-66 256.5 295 45.8
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.6e-63 248.1 214 59.3
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 4.1e-61 240.7 504 33.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 2.0e-60 238.4 203 57.1
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 2.1e-57 228.4 209 56.5
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 2.7e-57 228.0 204 55.4
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 1.5e-55 222.2 642 28.8
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.7e-54 217.6 216 52.3
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 2.5e-50 204.9 376 33.2
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 2.7e-49 201.4 220 53.2
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 5.7e-47 193.7 131 64.9
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 3.7e-46 191.0 260 45.0
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 1.3e-43 182.6 183 46.4
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.4e-39 167.9 295 35.3
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 6.4e-38 163.7 211 45.5
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 9.5e-34 149.8 100 64.0
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 1.8e-32 145.6 203 46.8
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 2.0e-31 142.1 218 40.4
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 3.2e-29 134.8 173 43.4
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.0e-29 133.7 359 35.9
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 1.2e-28 132.9 116 63.8
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 3.3e-26 124.8 113 52.2
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 4.4e-23 114.4 185 35.7
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 7.8e-20 103.6 546 28.0
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 6.6e-19 100.5 143 42.0
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 4.3e-18 97.8 191 33.5
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 1.2e-15 89.7 91 50.5
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 5.4e-13 80.9 107 43.0
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 9.2e-13 80.1 139 35.3
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 2.8e-09 68.6 51 56.9
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 2.0e-07 62.4 33 84.8


User provided reference genes

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