Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 0.0e+00 1364.7 677 100.0
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 0.0e+00 1174.8 677 86.0
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 0.0e+00 1153.3 678 84.1
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 0.0e+00 1144.0 644 87.1
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 0.0e+00 1136.7 677 82.7
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 0.0e+00 1132.1 677 82.4
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 0.0e+00 1116.7 687 81.4
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 0.0e+00 1092.8 677 80.4
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 0.0e+00 1086.2 637 84.0
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.8e-290 1002.3 677 75.9
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 7.1e-287 990.3 668 71.9
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 5.1e-285 984.2 676 71.9
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 5.1e-285 984.2 677 71.9
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-284 983.0 667 72.4
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 1.3e-283 979.5 676 71.9
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 2.8e-283 978.4 655 72.5
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 2.6e-281 971.8 673 71.6
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 4.5e-281 971.1 676 71.2
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 8.4e-280 966.8 646 73.1
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.4e-279 966.1 674 70.8
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 2.8e-275 951.8 669 70.7
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 6.2e-275 950.7 658 70.8
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 3.4e-273 944.9 674 69.3
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.6e-267 926.0 684 68.1
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.8e-266 922.5 644 71.4
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 1.5e-265 919.5 682 68.0
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.2e-262 909.8 675 67.9
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 1.0e-261 906.7 674 67.4
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.3e-261 905.6 675 67.7
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 6.7e-261 904.0 675 67.9
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 5.7e-260 901.0 676 67.0
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.3e-256 889.8 675 66.5
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 8.5e-256 887.1 671 67.1
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 7.2e-255 884.0 637 68.0
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 4.6e-254 881.3 673 66.9
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 7.9e-254 880.6 642 67.9
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.8e-253 879.4 677 66.2
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 5.1e-253 877.9 701 63.5
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 5.1e-253 877.9 659 66.2
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 1.5e-252 876.3 643 69.2
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 2.0e-252 875.9 671 66.0
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 5.7e-252 874.4 656 67.5
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 9.7e-252 873.6 642 67.6
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 1.3e-251 873.2 675 65.3
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 1.7e-251 872.8 657 67.9
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 2.2e-251 872.5 666 66.1
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 4.8e-251 871.3 643 67.7
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 8.2e-251 870.5 644 66.5
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 1.4e-250 869.8 669 65.8
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.4e-250 869.8 670 65.7
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 4.1e-250 868.2 676 64.5
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 5.3e-250 867.8 647 68.0
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 9.1e-250 867.1 638 66.6
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 2.0e-249 865.9 643 66.6
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 1.0e-248 863.6 654 66.8
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 2.2e-248 862.4 666 65.8
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 2.5e-247 859.0 643 66.6
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 4.2e-247 858.2 673 64.3
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 4.2e-247 858.2 673 64.3
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 4.7e-246 854.7 674 63.8
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 3.9e-245 851.7 679 62.4
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 8.8e-245 850.5 665 64.8
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 8.8e-245 850.5 648 65.9
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 2.6e-244 849.0 632 66.8
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 3.3e-244 848.6 647 65.5
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 3.3e-244 848.6 663 65.0
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 4.4e-244 848.2 668 64.8
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 9.7e-244 847.0 675 64.4
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 1.3e-243 846.7 668 64.8
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 1.7e-243 846.3 662 64.4
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 2.2e-243 845.9 682 62.5
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 3.7e-243 845.1 674 64.2
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 8.2e-243 844.0 669 64.4
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.8e-242 842.8 672 63.1
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 4.1e-242 841.6 647 65.2
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 7.0e-242 840.9 674 63.8
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 2.0e-241 839.3 667 62.7
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 2.6e-241 839.0 586 70.0
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 2.5e-239 832.4 667 63.6
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 5.5e-239 831.2 673 64.0
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 7.2e-239 830.9 648 64.2
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 9.4e-239 830.5 668 64.4
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 2.1e-238 829.3 667 62.8
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 1.8e-237 826.2 650 64.0
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 4.0e-237 825.1 676 63.5
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 2.0e-236 822.8 669 63.7
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 2.6e-236 822.4 668 64.1
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 1.3e-235 820.1 679 62.4
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 5.0e-232 808.1 647 62.6
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 4.2e-231 805.1 668 62.1
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 9.4e-231 803.9 682 60.0
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.6e-230 803.1 586 67.7
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 6.1e-230 801.2 586 67.4
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 1.1e-226 790.4 705 58.7
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 7.0e-226 787.7 611 65.1
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 8.6e-224 780.8 674 60.2
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 2.5e-223 779.2 641 60.7
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 5.4e-218 761.5 627 59.6
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 3.7e-211 738.8 610 62.1
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 1.1e-202 710.7 544 64.9
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 3.4e-196 689.1 558 62.4
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.8e-181 640.2 566 58.7
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.3e-174 617.5 507 62.9
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 3.5e-169 599.4 592 53.4
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 5.1e-160 568.9 681 46.5
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.1e-158 563.5 560 55.0
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.7e-152 542.0 579 50.8
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 7.4e-143 511.9 390 68.7
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 1.1e-141 508.1 640 45.5
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 5.0e-139 499.2 433 57.3
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.9e-136 489.6 458 55.2
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 9.1e-125 451.8 636 41.7
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 1.2e-121 441.4 795 35.8
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 3.1e-117 426.8 400 55.2
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 1.4e-104 384.8 575 41.2
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.2e-103 381.7 200 89.0
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 4.3e-90 336.7 280 61.4
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.6e-76 291.6 326 50.3
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 3.9e-75 287.0 205 69.8
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 8.9e-72 275.8 226 59.3
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 1.3e-67 261.9 212 59.9
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 8.7e-67 259.2 648 31.8
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 9.6e-66 255.8 415 42.2
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 7.3e-58 229.6 680 30.4
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.7e-54 218.4 648 28.2
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.4e-53 215.3 658 29.0
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 7.1e-53 213.0 172 65.1
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 9.3e-53 212.6 144 75.0
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 1.3e-46 192.2 169 58.6
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.4e-46 189.9 392 36.7
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 9.3e-45 186.0 335 38.8
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 2.7e-44 184.5 121 76.9
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 2.5e-42 177.9 145 57.2
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.0e-35 156.0 313 36.4
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 1.5e-34 152.1 127 64.6
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 1.3e-33 149.1 121 61.2
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 7.7e-31 139.8 108 72.2
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 4.2e-29 134.0 179 40.2
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.8e-25 121.3 235 37.9
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 4.8e-25 120.6 171 43.9
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.2e-25 119.8 235 37.4
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 8.2e-25 119.8 235 37.4
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.2e-25 119.8 235 37.4
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.2e-25 119.8 235 37.4
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 8.5e-22 109.8 116 50.0
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.5e-21 108.2 200 39.5
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 4.2e-21 107.5 200 39.5
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 5.5e-21 107.1 200 39.0
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.2e-20 105.9 200 39.0
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 5.1e-19 100.5 61 83.6
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 4.4e-18 97.4 61 82.0
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 3.9e-11 74.3 50 66.0
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.1e-08 66.2 40 70.0
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 3.1e-08 64.7 78 50.0
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 5.3e-08 63.9 76 48.7


User provided reference genes

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