Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 5.0e-131 471.1 234 100.0
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 2.7e-116 422.2 234 90.2
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 1.6e-113 412.9 238 86.1
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 8.3e-110 400.6 236 85.6
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 7.0e-109 397.5 236 85.2
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 1.3e-107 393.3 236 83.9
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 2.1e-100 369.4 231 79.2
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 3.9e-99 365.2 231 78.8
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 3.6e-97 358.6 233 75.1
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 3.1e-96 355.5 233 75.1
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 3.1e-96 355.5 233 75.1
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 2.0e-95 352.8 233 74.7
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 2.6e-95 352.4 235 77.0
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 2.6e-95 352.4 236 73.7
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 4.4e-95 351.7 233 74.7
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 4.9e-94 348.2 231 74.5
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 6.4e-94 347.8 231 74.0
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 1.4e-93 346.7 236 73.7
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 4.1e-93 345.1 236 73.3
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 5.4e-93 344.7 236 72.0
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 5.4e-93 344.7 236 72.0
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 6.0e-92 341.3 234 74.8
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 3.9e-91 338.6 228 73.7
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 7.3e-90 334.3 236 72.5
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 2.1e-89 332.8 234 73.1
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 8.1e-89 330.9 234 70.1
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 1.1e-88 330.5 234 70.1
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 1.4e-88 330.1 235 73.2
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 4.0e-88 328.6 243 70.8
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 2.6e-87 325.9 235 69.8
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 2.2e-86 322.8 237 70.5
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 2.9e-86 322.4 230 70.9
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 2.9e-86 322.4 235 68.5
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 4.9e-86 321.6 240 67.5
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 6.4e-86 321.2 234 68.4
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 1.1e-85 320.5 214 73.8
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 1.1e-85 320.5 231 70.6
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 1.4e-85 320.1 235 69.8
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 1.4e-85 320.1 234 68.8
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 9.3e-85 317.4 241 68.5
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 9.3e-85 317.4 239 69.0
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 1.2e-84 317.0 236 69.1
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 1.2e-84 317.0 257 65.0
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 1.2e-84 317.0 256 65.2
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 3.5e-84 315.5 232 68.5
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 4.6e-84 315.1 241 66.4
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 6.0e-84 314.7 214 72.4
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 6.0e-84 314.7 238 67.6
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 7.8e-84 314.3 238 67.6
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 1.0e-83 313.9 234 68.4
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 1.3e-83 313.5 234 67.9
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 1.3e-83 313.5 234 67.9
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 1.3e-83 313.5 244 67.6
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 1.7e-83 313.2 233 68.2
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 2.3e-83 312.8 247 64.8
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 5.1e-83 311.6 235 67.7
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 6.6e-83 311.2 235 68.1
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 8.7e-83 310.8 234 67.9
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 1.5e-82 310.1 243 66.3
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 3.3e-82 308.9 239 66.5
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 9.6e-82 307.4 246 65.0
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 1.1e-80 303.9 239 65.7
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 2.4e-80 302.8 238 63.4
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 3.1e-80 302.4 233 65.2
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 5.3e-80 301.6 235 65.5
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 1.3e-78 297.0 223 68.2
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 1.3e-78 297.0 235 65.5
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 3.8e-78 295.4 238 64.7
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 2.4e-77 292.7 307 53.1
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 9.3e-77 290.8 206 70.4
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 3.5e-76 288.9 237 62.9
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 4.6e-76 288.5 270 58.1
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 7.9e-76 287.7 236 63.1
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 7.9e-76 287.7 210 67.6
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 2.3e-75 286.2 233 63.1
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 1.9e-74 283.1 234 62.8
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 7.4e-74 281.2 210 66.2
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 6.2e-73 278.1 195 72.3
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 2.0e-71 273.1 255 58.4
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 2.2e-70 269.6 229 60.7
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 2.4e-69 266.2 235 59.1
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 6.7e-67 258.1 173 70.5
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 7.4e-66 254.6 170 74.7
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 7.4e-66 254.6 159 78.6
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 1.3e-65 253.8 178 70.8
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 1.3e-65 253.8 230 59.1
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 4.8e-65 251.9 215 63.7
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 1.8e-64 250.0 159 76.1
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 6.9e-64 248.1 229 56.3
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 1.3e-62 243.8 188 69.1
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 2.5e-61 239.6 162 75.9
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 5.5e-61 238.4 239 57.3
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 6.7e-59 231.5 158 73.4
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 8.2e-57 224.6 180 66.1
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 3.8e-54 215.7 192 60.4
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 2.3e-43 179.9 109 77.1
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 2.6e-42 176.4 129 65.9
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 8.2e-41 171.4 132 65.2
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 1.5e-34 150.6 94 77.7
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 2.3e-27 126.7 111 60.4
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 7.5e-26 121.7 102 64.7
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 2.0e-23 113.6 91 61.5
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 5.5e-21 105.5 77 67.5
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 3.0e-19 99.8 99 54.5
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 1.4e-16 90.9 61 73.8
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 9.1e-16 88.2 69 63.8
Psat0s4060g0280 Pisum sativum HOM05D007255 ORTHO05D009052 1.5e-13 80.9 72 62.5
Thecc.02G249200 Theobroma cacao HOM05D012462 ORTHO05D013132 1.4e-08 64.3 45 75.6
Potri.007G083100 Populus trichocarpa HOM05D007255 ORTHO05D009052 3.1e-08 63.2 36 86.1


User provided reference genes

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