Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 3.9e-224 781.2 400 100.0
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 1.4e-194 682.9 401 87.8
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 4.3e-191 671.4 401 86.5
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 4.2e-178 628.2 401 82.8
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 4.6e-177 624.8 403 82.1
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 6.9e-165 584.3 400 78.0
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 5.0e-163 578.2 397 76.3
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 1.4e-162 576.6 417 75.3
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 4.7e-161 571.6 412 76.2
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 7.9e-161 570.9 405 77.5
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 5.7e-159 564.7 403 77.2
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 9.7e-159 563.9 396 76.8
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 1.3e-158 563.5 349 85.4
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.3e-158 563.5 414 73.9
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 2.2e-158 562.8 405 75.1
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 3.7e-158 562.0 406 76.6
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 1.8e-157 559.7 410 76.1
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.5e-156 556.6 406 74.1
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 2.6e-156 555.8 398 75.4
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 2.6e-156 555.8 407 74.2
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 3.5e-156 555.4 398 75.6
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 5.9e-156 554.7 417 72.9
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 7.7e-156 554.3 400 73.5
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 1.3e-155 553.5 384 77.6
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 3.8e-155 552.0 392 75.8
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 3.8e-155 552.0 396 74.2
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 5.0e-155 551.6 350 82.6
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 8.5e-155 550.8 372 79.6
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 1.1e-154 550.4 393 75.1
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 2.5e-154 549.3 403 75.4
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 9.4e-154 547.4 397 73.6
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 1.2e-153 547.0 346 81.2
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 2.1e-153 546.2 391 75.7
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 4.7e-153 545.0 396 74.2
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 4.7e-153 545.0 395 73.4
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 6.1e-153 544.7 343 83.1
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 1.0e-152 543.9 407 73.5
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 1.4e-152 543.5 356 78.1
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.4e-152 543.5 391 75.7
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 1.4e-152 543.5 386 74.4
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 5.2e-152 541.6 377 75.1
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 1.1e-151 540.4 406 71.9
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 1.1e-151 540.4 406 71.9
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 2.6e-151 539.3 406 72.4
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 3.3e-151 538.9 377 74.5
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 4.4e-151 538.5 394 72.3
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 5.7e-151 538.1 403 72.5
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 6.3e-150 534.6 346 79.8
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 2.4e-149 532.7 387 74.2
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 3.1e-149 532.3 403 72.2
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 3.1e-149 532.3 382 74.3
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 5.3e-149 531.6 419 69.5
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 7.0e-149 531.2 377 74.8
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 9.1e-149 530.8 403 72.0
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.6e-148 530.0 406 71.4
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.6e-148 530.0 406 71.4
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.6e-148 530.0 358 77.1
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 2.6e-148 529.3 378 75.4
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 2.6e-148 529.3 394 73.9
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 2.6e-148 529.3 387 73.6
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 3.5e-148 528.9 436 68.3
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 7.7e-148 527.7 394 74.6
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 1.0e-147 527.3 380 73.9
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 2.2e-147 526.2 381 74.5
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 3.8e-147 525.4 349 78.5
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 5.0e-147 525.0 358 77.4
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 3.2e-146 522.3 394 71.1
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 3.2e-146 522.3 387 73.4
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 5.5e-146 521.5 390 72.1
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 1.4e-144 516.9 381 73.2
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 6.8e-144 514.6 368 76.6
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 2.0e-143 513.1 364 75.3
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 1.4e-141 506.9 405 69.9
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 1.4e-141 506.9 401 70.8
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 2.0e-140 503.1 391 71.4
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 1.1e-138 497.3 393 70.7
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 1.5e-138 496.9 397 70.0
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 1.5e-138 496.9 349 76.5
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 3.2e-138 495.7 363 73.6
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 5.5e-138 495.0 354 75.1
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 4.7e-137 491.9 405 67.9
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 8.0e-137 491.1 351 74.9
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.4e-133 480.3 392 67.6
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 7.0e-133 478.0 371 69.0
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 1.2e-132 477.2 348 71.0
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 5.0e-131 471.9 296 83.1
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 1.1e-130 470.7 322 74.8
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 8.9e-128 461.1 353 69.4
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 2.0e-127 459.9 321 71.7
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 7.8e-124 448.0 415 62.2
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 1.0e-123 447.6 303 79.9
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 5.0e-123 445.3 314 73.9
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 5.0e-115 418.7 390 61.3
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 1.2e-111 407.5 291 72.5
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 9.8e-111 404.4 425 58.8
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 7.6e-103 378.3 315 62.5
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 6.0e-100 368.6 239 79.5
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 1.6e-81 307.4 288 59.7
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 8.1e-81 305.1 201 76.6
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 4.0e-80 302.8 295 62.7
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 4.5e-79 299.3 341 45.5
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 2.2e-78 297.0 318 49.7
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.4e-77 294.3 247 68.0
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 2.7e-76 290.0 282 61.7
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 4.6e-76 289.3 331 45.3
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 4.8e-73 279.3 901 29.9
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 8.4e-70 268.5 501 39.7
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 3.2e-69 266.5 262 52.3
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 6.7e-67 258.8 158 84.2
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.1e-56 224.9 143 80.4
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 3.3e-50 203.4 158 74.7
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 9.4e-45 185.3 124 76.6
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 3.1e-40 170.2 103 83.5
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 1.9e-37 161.0 177 53.7
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 1.8e-32 144.4 308 35.7
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 6.3e-25 119.4 82 73.2
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 1.6e-15 88.2 260 28.5
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 1.3e-14 85.1 46 89.1
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 1.1e-13 82.0 81 56.8
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 3.3e-13 80.5 48 81.2
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 7.3e-13 79.3 282 29.1
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 9.5e-13 79.0 49 77.6
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 4.9e-09 66.6 74 54.1


User provided reference genes

Program Settings