Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G205100 Theobroma cacao HOM05D008282 ORTHO05D009173 8.2e-47 189.9 86 100.0
COL.COLO4_29927 Corchorus olitorius HOM05D008282 ORTHO05D009173 2.2e-28 128.6 86 67.4
Thecc.01G234600 Theobroma cacao HOM05D008282 ORTHO05D009173 1.0e-25 119.8 86 61.6
Duzib138G1397 Durio zibethinus HOM05D008282 ORTHO05D009173 1.8e-25 119.0 86 60.5
Duzib138G1943 Durio zibethinus HOM05D008282 ORTHO05D009173 1.8e-25 119.0 86 61.6
Gohir.D02G064025 Gossypium hirsutum HOM05D008282 ORTHO05D009173 4.1e-22 107.8 58 67.2
Gohir.A02G058203 Gossypium hirsutum HOM05D008282 ORTHO05D009173 5.3e-22 107.5 58 65.5
Gorai.005G072200 Gossypium raimondii HOM05D008282 ORTHO05D009173 5.3e-22 107.5 58 67.2
Gorai.005G072300 Gossypium raimondii HOM05D008282 ORTHO05D009173 5.3e-22 107.5 58 67.2
Gohir.D02G064050 Gossypium hirsutum HOM05D008282 ORTHO05D009173 2.0e-21 105.5 58 65.5
Gohir.D02G064075 Gossypium hirsutum HOM05D008282 ORTHO05D009173 3.5e-21 104.8 71 57.7
Gohir.A02G058202 Gossypium hirsutum HOM05D008282 ORTHO05D009173 5.9e-21 104.0 58 65.5
Gorai.005G072400 Gossypium raimondii HOM05D008282 ORTHO05D009173 1.7e-20 102.4 71 56.3
Duzib138G0497 Durio zibethinus HOM05D008282 ORTHO05D009173 2.9e-20 101.7 87 55.2
Gorai.005G072100 Gossypium raimondii HOM05D008282 ORTHO05D009173 1.9e-19 99.0 58 62.1
MELO3C029307.2 Cucumis melo HOM05D008282 ORTHO05D009173 1.0e-17 93.2 58 63.8
CSS0031071 Camellia sinensis var. sinensis HOM05D008282 ORTHO05D009173 1.4e-17 92.8 59 61.0
Actinidia29960 Actinidia chinensis HOM05D008282 ORTHO05D009173 1.8e-17 92.4 87 48.3
FvH4_1g19000 Fragaria vesca HOM05D008282 ORTHO05D009173 3.0e-17 91.7 86 47.7
AT5G52605 Arabidopsis thaliana HOM05D008282 ORTHO05D009173 4.0e-17 91.3 89 47.2
THA.LOC104804768 Tarenaya hassleriana HOM05D008282 ORTHO05D009173 4.0e-17 91.3 98 49.0
Carub.0007s2804 Capsella rubella HOM05D008282 ORTHO05D009173 8.8e-17 90.1 91 48.4
Thecc.05G205200 Theobroma cacao HOM05D008282 ORTHO05D000004 5.7e-16 87.4 61 60.7
Carub.0007s2805 Capsella rubella HOM05D008282 ORTHO05D009173 7.5e-16 87.0 93 40.9
Thhalv10026987m.g Eutrema salsugineum HOM05D008282 ORTHO05D009173 7.5e-16 87.0 95 43.2
CARHR220430 Cardamine hirsuta HOM05D008282 ORTHO05D009173 9.8e-16 86.7 89 42.7
Prupe.6G209700 Prunus persica HOM05D008282 ORTHO05D009173 9.8e-16 86.7 86 44.2
Prupe.6G209800 Prunus persica HOM05D008282 ORTHO05D009173 9.8e-16 86.7 86 44.2
Potri.013G113600 Populus trichocarpa HOM05D008282 ORTHO05D009173 1.3e-15 86.3 83 50.6
Potri.013G113550 Populus trichocarpa HOM05D008282 ORTHO05D009173 2.8e-15 85.1 88 48.9
Aa31LG9G3100 Aethionema arabicum HOM05D008282 ORTHO05D009173 3.7e-15 84.7 81 48.1
AT4G14276 Arabidopsis thaliana HOM05D008282 ORTHO05D009173 4.8e-15 84.3 94 44.7
Prupe.6G206000 Prunus persica HOM05D008282 ORTHO05D009173 6.3e-15 84.0 55 58.2
THA.LOC104816929 Tarenaya hassleriana HOM05D008282 ORTHO05D009173 6.3e-15 84.0 86 46.5
Potri.016G130300 Populus trichocarpa HOM05D008282 ORTHO05D009173 8.3e-15 83.6 83 50.6
Prupe.6G206400 Prunus persica HOM05D008282 ORTHO05D009173 1.1e-14 83.2 86 43.0
Prupe.6G205300 Prunus persica HOM05D008282 ORTHO05D009173 1.4e-14 82.8 86 43.0
FAN19G2952 Fragaria x ananassa HOM05D008282 ORTHO05D009173 5.4e-14 80.9 78 44.9
Gorai.005G072000 Gossypium raimondii HOM05D008282 ORTHO05D009173 1.2e-13 79.7 58 53.4
CsaV3_1G039450 Cucumis sativus L. HOM05D008282 ORTHO05D009173 3.5e-13 78.2 81 48.1
Solyc07g008375.1 Solanum lycopersicum HOM05D008282 ORTHO05D009173 5.9e-13 77.4 82 43.9
Solyc07g008377.1 Solanum lycopersicum HOM05D008282 ORTHO05D009173 5.9e-13 77.4 82 43.9
CsaV3_1G039470 Cucumis sativus L. HOM05D008282 ORTHO05D009173 1.0e-12 76.6 54 59.3
Oeu020583.1 Olea europaea HOM05D008282 ORTHO05D009173 2.9e-12 75.1 87 46.0
ClCG03G016530 Citrullus lanatus HOM05D008282 ORTHO05D009173 6.6e-12 73.9 46 65.2
BraA02t04950Z Brassica rapa HOM05D008408 ORTHO05D009173 8.6e-12 73.6 88 44.3
Carub.0007s2806 Capsella rubella HOM05D008282 ORTHO05D009173 8.6e-12 73.6 88 42.0
C02p03510 Brassica napus HOM05D008408 ORTHO05D009173 1.5e-11 72.8 88 44.3
BolC2t06310H Brassica oleracea HOM05D008408 ORTHO05D009173 1.5e-11 72.8 88 44.3
C02p03520 Brassica napus HOM05D008408 ORTHO05D009173 2.5e-11 72.0 88 43.2
BolC2t06311H Brassica oleracea HOM05D008408 ORTHO05D009173 2.5e-11 72.0 88 43.2
Nitab4.5_0002770g0030 Nicotiana tabacum HOM05D008282 ORTHO05D009173 2.5e-11 72.0 54 48.1
Carub.0008s0682 Capsella rubella HOM05D008408 ORTHO05D009173 3.3e-11 71.6 88 42.0
Gohir.A02G058204 Gossypium hirsutum HOM05D008282 ORTHO05D009173 3.3e-11 71.6 58 51.7
Potri.005G074350 Populus trichocarpa HOM05D008282 ORTHO05D009173 3.3e-11 71.6 88 44.3
THA.LOC109116863 Tarenaya hassleriana HOM05D008408 ORTHO05D009173 3.3e-11 71.6 88 44.3
THA.LOC109116906 Tarenaya hassleriana HOM05D008408 ORTHO05D009173 5.5e-11 70.9 88 39.8
Atru.chr11.1626 Acer truncatum HOM05D008282 ORTHO05D009173 7.2e-11 70.5 69 44.9
CARHR216630 Cardamine hirsuta HOM05D008282 ORTHO05D009173 7.2e-11 70.5 40 65.0
BraA10t44883Z Brassica rapa HOM05D008408 ORTHO05D009173 9.5e-11 70.1 88 42.0
A10p28360 Brassica napus HOM05D008408 ORTHO05D009173 1.2e-10 69.7 88 42.0
C09p68620 Brassica napus HOM05D008408 ORTHO05D009173 1.6e-10 69.3 88 40.9
THA.LOC104807177 Tarenaya hassleriana HOM05D008408 ORTHO05D009173 2.8e-10 68.6 89 43.8
BcaC03g13221 Brassica carinata HOM05D008408 ORTHO05D009173 3.6e-10 68.2 93 41.9
Sopen07g004270 Solanum pennellii HOM05D008282 ORTHO05D009173 3.6e-10 68.2 74 41.9
Solyc07g008373.1 Solanum lycopersicum HOM05D008282 ORTHO05D009173 4.7e-10 67.8 85 38.8
THA.LOC109116535 Tarenaya hassleriana HOM05D008408 ORTHO05D009173 6.1e-10 67.4 88 40.9
BcaB08g37265 Brassica carinata HOM05D008408 ORTHO05D009173 4.0e-09 64.7 88 38.6
MD15G1119700 Malus domestica HOM05D008282 ORTHO05D009173 4.0e-09 64.7 86 40.7
AT5G08315 Arabidopsis thaliana HOM05D008408 ORTHO05D009173 6.8e-09 63.9 89 42.7
AT5G08055 Arabidopsis thaliana HOM05D008408 ORTHO05D009173 2.0e-08 62.4 88 38.6
Sp4g25680 Schrenkiella parvula HOM05D008408 ORTHO05D009173 5.7e-08 60.8 85 37.6
AT5G19315 Arabidopsis thaliana HOM05D008408 ORTHO05D009173 9.8e-08 60.1 85 40.0
PSO063G3641 Papaver somniferum HOM05D008282 ORTHO05D009173 4.9e-07 57.8 88 40.9
BNapus_Darmor_BZH_scaffold_38p02640 Brassica napus HOM05D008408 ORTHO05D009173 6.3e-07 57.4 85 36.5
A02p05470 Brassica napus HOM05D008408 ORTHO05D009173 1.1e-06 56.6 85 36.5
BraA02t05498Z Brassica rapa HOM05D008408 ORTHO05D009173 1.1e-06 56.6 85 36.5
CiPaw.05G009900 Carya illinoinensis HOM05D009110 ORTHO05D011182 1.4e-06 56.2 83 34.9
Migut.B01132 Erythranthe guttata HOM05D009110 ORTHO05D011182 1.4e-06 56.2 87 37.9
CsaV3_1G039460 Cucumis sativus L. HOM05D008282 ORTHO05D009173 7.0e-06 53.9 131 29.0


User provided reference genes

Program Settings