Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 2.1e-110 402.5 226 100.0
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 3.6e-86 322.0 226 82.3
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 3.5e-81 305.4 226 77.0
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 3.5e-81 305.4 226 77.0
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 1.1e-79 300.4 226 79.2
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 3.6e-78 295.4 187 89.8
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 2.0e-68 263.1 226 69.0
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 7.4e-63 244.6 225 64.0
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 1.6e-62 243.4 188 70.2
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 9.3e-58 227.6 227 59.9
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 1.2e-57 227.3 226 61.1
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 4.6e-57 225.3 226 62.4
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 7.9e-57 224.6 227 61.7
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.0e-56 224.2 273 53.8
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 1.0e-56 224.2 226 59.3
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.3e-56 223.8 226 67.3
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 2.3e-56 223.0 220 60.5
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 3.9e-56 222.2 228 63.6
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 8.7e-56 221.1 224 60.7
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 1.1e-55 220.7 229 60.3
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 1.1e-55 220.7 208 63.9
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.5e-55 220.3 226 61.9
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.9e-55 219.9 226 63.3
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.9e-55 219.9 226 67.3
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 4.3e-55 218.8 193 63.2
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 2.8e-54 216.1 197 61.4
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 2.8e-54 216.1 229 59.0
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 2.8e-54 216.1 231 60.2
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 8.2e-54 214.5 197 60.9
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 1.1e-53 214.2 226 56.6
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 1.4e-53 213.8 226 55.8
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 1.0e-51 207.6 215 59.1
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.3e-51 207.2 251 55.4
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 2.2e-51 206.5 224 57.1
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 3.8e-51 205.7 232 58.2
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 6.5e-51 204.9 230 55.2
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 8.4e-51 204.5 232 59.1
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 8.4e-51 204.5 186 60.2
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.4e-50 203.8 175 66.9
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 2.5e-50 203.0 179 63.1
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 4.2e-50 202.2 197 59.4
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 4.2e-50 202.2 224 56.7
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 5.5e-50 201.8 228 57.9
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 1.2e-49 200.7 232 56.9
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 1.6e-49 200.3 176 62.5
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 4.6e-49 198.7 221 60.2
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 4.6e-49 198.7 230 56.5
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 4.6e-49 198.7 134 76.1
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 7.9e-49 198.0 227 54.6
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 7.9e-49 198.0 177 61.6
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 3.0e-48 196.1 214 55.6
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 3.9e-48 195.7 226 55.8
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 6.7e-48 194.9 226 59.7
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 1.1e-47 194.1 108 89.8
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 1.5e-47 193.7 225 56.9
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 1.5e-47 193.7 226 55.3
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 5.7e-47 191.8 186 61.3
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 5.7e-47 191.8 241 53.9
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 1.3e-46 190.7 181 64.1
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 2.2e-46 189.9 117 80.3
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 2.8e-46 189.5 203 58.1
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 2.4e-45 186.4 226 54.4
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 4.1e-45 185.7 194 55.7
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 5.3e-45 185.3 187 57.2
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 5.3e-45 185.3 197 55.3
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 6.9e-45 184.9 229 52.0
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 6.9e-45 184.9 215 53.5
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 9.0e-45 184.5 242 54.5
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 4.5e-44 182.2 197 54.8
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 4.5e-44 182.2 186 58.1
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 1.3e-43 180.6 224 51.8
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 2.9e-43 179.5 233 51.9
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.9e-43 179.5 145 65.5
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 5.0e-43 178.7 138 69.6
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 6.5e-43 178.3 220 53.6
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 6.5e-43 178.3 169 59.8
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 8.5e-43 177.9 233 53.6
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 1.1e-42 177.6 141 69.5
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 1.1e-42 177.6 141 69.5
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 1.9e-42 176.8 227 52.0
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 2.5e-42 176.4 185 55.1
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 2.5e-42 176.4 230 51.7
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 3.2e-42 176.0 226 53.1
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 5.5e-42 175.3 118 75.4
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 7.2e-42 174.9 225 52.9
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 2.7e-41 172.9 238 52.1
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 6.1e-41 171.8 215 52.1
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 6.1e-41 171.8 215 52.1
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 7.9e-41 171.4 118 73.7
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 1.8e-40 170.2 123 71.5
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 1.8e-40 170.2 228 50.0
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 3.9e-40 169.1 229 49.8
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 6.7e-40 168.3 217 51.2
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 8.8e-40 167.9 217 52.1
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 8.8e-40 167.9 135 68.1
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 2.0e-39 166.8 228 52.6
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 2.5e-39 166.4 187 52.9
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 3.3e-39 166.0 174 52.3
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 2.8e-38 162.9 105 78.1
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 3.7e-38 162.5 231 49.4
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 3.1e-37 159.5 106 67.9
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 4.1e-37 159.1 250 46.0
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 9.1e-37 157.9 135 65.2
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 4.5e-36 155.6 155 65.8
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 7.7e-36 154.8 174 49.4
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 1.3e-35 154.1 138 60.9
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 3.2e-34 149.4 88 81.8
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 3.0e-32 142.9 235 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 4.5e-28 129.0 125 53.6
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 1.0e-24 117.9 101 53.5
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 1.8e-24 117.1 108 52.8
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 1.8e-24 117.1 110 53.6
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 5.2e-24 115.5 178 48.3
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 5.7e-15 85.5 182 40.7
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 1.3e-14 84.3 72 55.6
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 5.9e-12 75.5 161 42.9
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 9.8e-07 58.2 153 45.8
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 6.3e-06 55.5 39 69.2


User provided reference genes

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