Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 4.6e-152 541.2 271 100.0
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 2.0e-123 446.0 271 82.3
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 5.1e-103 378.3 273 71.8
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.3e-101 373.6 273 71.1
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 2.8e-101 372.5 273 71.4
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 8.8e-71 271.2 177 79.7
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 4.1e-52 209.1 248 47.2
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 5.4e-52 208.8 248 46.4
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 1.0e-50 204.5 248 45.6
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 8.6e-50 201.4 249 46.6
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 1.8e-47 193.7 249 43.0
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 3.0e-47 193.0 249 43.0
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 6.8e-47 191.8 248 42.7
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 6.8e-47 191.8 247 44.5
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 2.6e-46 189.9 248 43.1
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.4e-46 189.5 247 45.3
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 4.4e-46 189.1 247 44.1
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 9.8e-46 188.0 249 43.4
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 9.8e-46 188.0 248 43.5
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 2.2e-45 186.8 248 41.9
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 8.3e-45 184.9 247 44.1
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 1.1e-44 184.5 247 44.5
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 1.9e-44 183.7 247 38.9
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 1.9e-44 183.7 250 41.2
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 4.1e-44 182.6 248 42.7
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 4.1e-44 182.6 247 44.5
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 5.4e-44 182.2 250 42.8
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 5.4e-44 182.2 248 41.9
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 7.0e-44 181.8 248 43.5
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 7.0e-44 181.8 248 41.1
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 7.0e-44 181.8 248 39.9
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 1.2e-43 181.0 248 43.5
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 1.2e-43 181.0 248 43.5
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.2e-43 181.0 247 44.1
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 6.0e-43 178.7 249 42.6
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 7.8e-43 178.3 248 42.7
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 7.8e-43 178.3 248 42.7
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 7.8e-43 178.3 244 40.6
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 3.9e-42 176.0 248 40.3
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 6.6e-42 175.3 248 41.5
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 4.3e-41 172.6 248 40.3
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 4.3e-41 172.6 249 38.2
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 1.2e-40 171.0 248 39.1
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 2.3e-39 166.8 178 49.4
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 3.1e-39 166.4 248 38.3
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 3.1e-39 166.4 249 41.0
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 4.0e-39 166.0 246 39.0
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 6.8e-39 165.2 248 41.5
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 1.2e-38 164.5 247 38.1
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 2.6e-38 163.3 271 36.9
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 3.4e-38 162.9 248 38.3
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 5.8e-38 162.2 248 38.3
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 9.8e-38 161.4 205 42.4
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 2.2e-37 160.2 248 38.3
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 2.9e-37 159.8 174 50.0
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 3.7e-37 159.5 249 39.4
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 1.1e-36 157.9 248 37.1
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 4.1e-36 156.0 248 39.1
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 9.2e-36 154.8 250 36.8
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 9.2e-36 154.8 250 36.0
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 9.2e-36 154.8 247 38.5
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 2.1e-35 153.7 248 37.9
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 2.1e-35 153.7 247 37.7
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 3.5e-35 152.9 250 36.4
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 3.5e-35 152.9 247 36.8
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 3.5e-35 152.9 248 38.3
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 4.6e-35 152.5 247 37.2
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 7.8e-35 151.8 251 36.7
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 8.6e-34 148.3 252 36.5
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 1.5e-33 147.5 248 35.5
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 1.9e-33 147.1 178 44.9
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 1.9e-33 147.1 247 37.2
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 4.3e-33 146.0 191 44.5
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 7.3e-33 145.2 249 36.5
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 9.5e-33 144.8 248 36.3
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.2e-32 144.4 236 34.7
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.2e-32 144.4 251 37.5
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 2.8e-32 143.3 248 35.9
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 3.1e-31 139.8 248 34.7
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 6.8e-31 138.7 248 37.5
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 2.6e-30 136.7 250 34.4
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 7.5e-30 135.2 251 35.1
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 1.3e-29 134.4 226 36.7
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 6.4e-29 132.1 295 30.5
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 4.6e-27 125.9 208 34.6
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 4.6e-27 125.9 182 38.5
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 6.0e-27 125.6 248 34.7
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 1.9e-25 120.6 202 35.1
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 7.3e-25 118.6 165 38.8
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 9.9e-22 108.2 208 33.2
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 1.2e-19 101.3 247 27.9
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.5e-19 99.8 247 31.2
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 6.6e-18 95.5 147 34.7
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 1.1e-17 94.7 247 27.5
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 9.3e-12 75.1 207 25.6
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.6e-11 74.3 108 34.3


User provided reference genes

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