Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 3.9e-50 201.1 94 100.0
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 5.3e-47 190.7 94 94.7
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 3.4e-30 134.8 67 91.0
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 7.6e-22 107.1 83 67.5
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.0e-21 106.7 64 84.4
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.0e-21 106.7 64 84.4
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 1.3e-21 106.3 75 73.3
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.7e-21 105.9 64 82.8
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 2.9e-21 105.1 75 72.0
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 3.8e-21 104.8 64 82.8
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 4.9e-21 104.4 90 63.3
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 8.4e-21 103.6 64 81.2
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 1.4e-20 102.8 64 78.1
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.4e-20 102.8 64 82.8
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.4e-20 102.8 64 82.8
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.4e-20 102.8 64 82.8
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 1.9e-20 102.4 64 81.2
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.9e-20 102.4 64 81.2
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 2.5e-20 102.1 64 81.2
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 2.5e-20 102.1 68 79.4
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 3.2e-20 101.7 75 66.7
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.2e-20 101.7 64 78.1
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 3.2e-20 101.7 64 78.1
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 3.2e-20 101.7 64 79.7
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 4.2e-20 101.3 64 79.7
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 4.2e-20 101.3 64 78.1
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 4.2e-20 101.3 64 79.7
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 4.2e-20 101.3 64 78.1
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 5.5e-20 100.9 64 78.1
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 5.5e-20 100.9 64 76.6
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 5.5e-20 100.9 73 72.6
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 5.5e-20 100.9 64 79.7
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 5.5e-20 100.9 64 79.7
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 5.5e-20 100.9 64 79.7
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 7.1e-20 100.5 64 79.7
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 7.1e-20 100.5 64 78.1
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 7.1e-20 100.5 64 78.1
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 7.1e-20 100.5 102 57.8
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 9.3e-20 100.1 64 78.1
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 9.3e-20 100.1 64 78.1
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 1.2e-19 99.8 75 65.3
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.2e-19 99.8 64 79.7
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.6e-19 99.4 64 78.1
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 1.6e-19 99.4 75 68.0
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 2.1e-19 99.0 75 68.0
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 2.1e-19 99.0 64 76.6
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 2.1e-19 99.0 64 76.6
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 2.1e-19 99.0 64 76.6
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.1e-19 99.0 64 76.6
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 2.1e-19 99.0 64 76.6
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 2.1e-19 99.0 64 76.6
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 4.6e-19 97.8 64 78.1
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 4.6e-19 97.8 64 76.6
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 4.6e-19 97.8 64 76.6
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 4.6e-19 97.8 64 76.6
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 4.6e-19 97.8 64 76.6
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 4.6e-19 97.8 64 76.6
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 4.6e-19 97.8 64 76.6
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 6.0e-19 97.4 64 75.0
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 6.0e-19 97.4 64 76.6
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 7.9e-19 97.1 64 75.0
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 7.9e-19 97.1 64 76.6
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 1.0e-18 96.7 64 75.0
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.0e-18 96.7 64 75.0
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 1.0e-18 96.7 74 66.2
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 1.3e-18 96.3 64 75.0
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 1.8e-18 95.9 64 73.4
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.8e-18 95.9 64 71.9
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 2.3e-18 95.5 64 73.4
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 2.3e-18 95.5 64 71.9
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 2.3e-18 95.5 64 71.9
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 2.3e-18 95.5 64 73.4
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.3e-18 95.5 64 73.4
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 2.3e-18 95.5 64 73.4
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 2.3e-18 95.5 64 75.0
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 3.0e-18 95.1 64 75.0
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 3.9e-18 94.7 90 55.6
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 3.9e-18 94.7 64 73.4
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 3.9e-18 94.7 73 69.9
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 3.9e-18 94.7 64 73.4
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 6.7e-18 94.0 90 54.4
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 6.7e-18 94.0 64 70.3
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 6.7e-18 94.0 64 71.9
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 1.1e-17 93.2 64 70.3
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 1.9e-17 92.4 64 71.9
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 1.9e-17 92.4 67 70.1
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 2.5e-17 92.0 75 61.3
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 2.5e-17 92.0 75 61.3
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 3.3e-17 91.7 90 53.3
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 3.3e-17 91.7 64 67.2
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 3.3e-17 91.7 64 68.8
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 5.7e-17 90.9 64 68.8
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 5.7e-17 90.9 64 67.2
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 5.7e-17 90.9 75 64.0
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 7.4e-17 90.5 64 68.8
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 9.7e-17 90.1 64 67.2
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 9.7e-17 90.1 64 70.3
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 9.7e-17 90.1 64 64.1
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 1.6e-16 89.4 75 57.3
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 1.6e-16 89.4 75 57.3
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 1.6e-16 89.4 75 57.3
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 1.6e-16 89.4 90 51.1
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 1.6e-16 89.4 75 57.3
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 1.6e-16 89.4 75 57.3
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 2.8e-16 88.6 90 51.1
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 2.8e-16 88.6 64 68.8
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 3.7e-16 88.2 64 67.2
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 6.3e-16 87.4 90 50.0
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 1.8e-15 85.9 75 54.7
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 4.5e-14 81.3 64 60.9
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 2.2e-13 79.0 64 57.8
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 5.0e-13 77.8 64 57.8
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 4.2e-12 74.7 63 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 5.5e-12 74.3 63 57.1
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 2.1e-11 72.4 76 39.5
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 2.7e-11 72.0 64 51.6
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.0e-10 70.1 64 50.0
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 8.8e-10 67.0 63 57.1
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 2.5e-09 65.5 68 44.1
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 5.7e-09 64.3 37 83.8
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 2.8e-08 62.0 37 78.4
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 6.3e-08 60.8 37 75.7
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 8.2e-08 60.5 54 57.4
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 3.4e-06 55.1 48 54.2


User provided reference genes

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