Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 4.5e-261 904.0 451 100.0
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.3e-212 743.0 428 82.9
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 2.5e-211 738.8 428 81.3
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 4.2e-211 738.0 430 81.2
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.4e-211 736.9 428 81.3
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.2e-210 736.5 432 82.2
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 3.6e-210 734.9 431 81.7
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 4.0e-209 731.5 429 81.8
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 7.7e-205 717.2 430 81.2
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.6e-187 657.9 374 82.6
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 2.1e-170 602.8 429 69.2
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.1e-169 600.5 429 66.4
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 1.2e-168 597.0 430 67.4
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 2.0e-168 596.3 429 66.0
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 3.4e-168 595.5 429 65.7
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 5.8e-168 594.7 429 66.0
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 8.4e-167 590.9 436 66.5
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 5.4e-166 588.2 437 66.1
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 1.3e-164 583.6 435 65.3
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 1.1e-163 580.5 430 65.1
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 3.6e-162 575.5 433 65.8
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 4.7e-162 575.1 437 65.9
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 8.1e-162 574.3 430 64.2
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 2.4e-161 572.8 437 64.3
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 9.0e-161 570.9 442 66.5
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 2.3e-156 556.2 430 63.3
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 7.3e-155 551.2 439 62.9
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 2.1e-154 549.7 438 63.0
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 8.1e-154 547.7 433 62.6
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 1.8e-153 546.6 433 62.4
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 2.6e-152 542.7 428 61.7
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 3.4e-152 542.3 420 63.8
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 1.7e-151 540.0 418 62.7
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 8.4e-151 537.7 436 61.7
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 1.1e-150 537.3 436 62.6
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 3.2e-150 535.8 437 61.1
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 7.1e-150 534.6 423 61.9
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 9.3e-150 534.3 432 61.6
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 2.1e-149 533.1 435 59.8
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 3.5e-149 532.3 433 61.9
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 4.6e-149 531.9 436 59.4
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 1.8e-148 530.0 457 60.8
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 5.1e-148 528.5 433 60.0
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 8.7e-148 527.7 440 59.8
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 8.7e-148 527.7 433 62.4
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 8.7e-148 527.7 423 61.5
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 4.3e-147 525.4 439 58.5
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 1.3e-146 523.9 436 60.1
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 2.1e-146 523.1 436 60.1
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 2.1e-146 523.1 436 60.1
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 3.7e-146 522.3 436 59.9
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 4.8e-146 521.9 435 61.8
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 8.1e-146 521.2 436 59.6
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 8.1e-146 521.2 374 68.4
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 3.1e-145 519.2 436 59.2
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.2e-144 517.3 443 59.4
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 8.4e-143 511.1 446 59.0
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 1.9e-142 510.0 468 56.2
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 4.2e-142 508.8 420 58.6
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 2.3e-140 503.1 431 57.8
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 5.3e-137 491.9 419 58.2
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 6.9e-137 491.5 437 57.0
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 5.8e-136 488.4 397 61.7
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 2.2e-135 486.5 431 58.5
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 2.2e-135 486.5 437 54.2
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 4.2e-134 482.3 383 62.4
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 3.0e-132 476.1 472 53.2
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 3.3e-131 472.6 379 61.7
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 3.3e-131 472.6 434 53.9
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.3e-130 470.7 431 56.4
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 1.1e-129 467.6 479 51.4
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 1.2e-128 464.2 429 55.9
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.5e-128 463.8 385 58.4
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.0e-128 463.4 399 61.7
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 2.9e-127 459.5 381 59.8
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 5.0e-127 458.8 427 53.4
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 3.2e-126 456.1 382 58.1
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.6e-125 453.8 423 56.5
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 4.6e-125 452.2 379 58.6
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 1.4e-124 450.7 439 52.8
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.8e-124 450.3 413 53.8
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 4.8e-122 442.2 382 56.8
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 8.2e-122 441.4 350 61.7
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 6.9e-121 438.3 377 58.4
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.7e-119 433.7 419 48.7
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 3.8e-119 432.6 324 64.2
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 1.9e-118 430.3 379 57.0
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.2e-117 427.6 379 54.6
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 6.7e-116 421.8 442 50.7
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 3.3e-115 419.5 436 51.4
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 4.4e-115 419.1 433 52.4
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 5.7e-115 418.7 444 51.1
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 4.8e-114 415.6 425 49.9
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.4e-113 414.1 436 48.9
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 1.8e-113 413.7 505 45.1
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 3.1e-113 412.9 374 54.0
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 5.3e-113 412.1 428 51.2
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 4.5e-112 409.1 429 51.7
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 3.8e-111 406.0 434 50.2
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 5.0e-111 405.6 349 59.9
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 3.2e-110 402.9 426 51.9
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 2.1e-109 400.2 426 51.6
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 5.2e-108 395.6 433 50.1
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 2.4e-105 386.7 443 48.1
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 5.3e-105 385.6 294 63.9
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 1.3e-103 380.9 417 46.0
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 5.0e-103 379.0 449 47.2
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 4.2e-102 375.9 403 49.1
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 3.0e-100 369.8 428 49.3
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 1.8e-97 360.5 418 45.9
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 2.0e-96 357.1 398 48.7
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 7.2e-94 348.6 385 50.1
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.8e-89 334.0 429 42.2
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.4e-89 333.6 426 41.8
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.4e-89 333.6 447 41.4
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 5.4e-89 332.4 347 50.7
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 7.0e-89 332.0 437 43.0
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 2.0e-88 330.5 421 44.9
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 3.5e-88 329.7 437 42.8
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 9.2e-73 278.5 425 36.9
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.7e-72 276.9 394 39.6
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 6.0e-72 275.8 270 52.2
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 4.1e-57 226.5 431 31.8
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 4.4e-51 206.5 314 39.5
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 3.8e-26 123.6 131 48.9
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 2.7e-24 117.5 147 44.9
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 1.8e-15 88.2 59 76.3
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.4e-12 77.8 76 50.0
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 3.1e-12 77.4 78 70.5
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 1.2e-11 75.5 54 68.5
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 1.1e-09 68.9 68 51.5
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 3.6e-08 63.9 59 54.2
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 6.1e-08 63.2 52 65.4


User provided reference genes

Program Settings