Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 3.5e-62 241.5 126 100.0
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 4.7e-51 204.5 126 85.7
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 7.1e-39 164.1 139 74.1
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.5e-38 161.8 127 74.0
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 7.8e-38 160.6 127 74.0
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 7.8e-38 160.6 127 74.0
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 5.2e-34 147.9 125 63.2
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 1.3e-32 143.3 134 67.2
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 4.9e-32 141.4 129 61.2
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 3.2e-31 138.7 138 62.3
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 1.6e-30 136.3 126 58.7
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 3.5e-30 135.2 126 57.9
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 6.6e-29 131.0 126 59.5
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 4.7e-27 124.8 140 60.7
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 1.8e-26 122.9 127 55.9
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 6.8e-26 120.9 129 63.6
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.0e-25 119.4 127 59.1
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.6e-25 119.0 127 55.1
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.6e-25 119.0 127 55.1
Potri.014G165000 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.4e-25 118.6 142 59.9
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 5.8e-25 117.9 130 56.9
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 9.9e-25 117.1 130 56.9
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 1.3e-24 116.7 133 53.4
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 1.7e-24 116.3 130 59.2
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 3.8e-24 115.2 130 56.2
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 1.9e-23 112.8 126 51.6
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 9.3e-23 110.5 126 50.0
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 1.1e-20 103.6 135 49.6
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 1.9e-20 102.8 127 53.5
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 7.3e-20 100.9 126 54.0
TWI36G0659 Tripterygium wilfordii HOM05D004793 ORTHO05D004423 9.6e-20 100.5 131 51.1
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.1e-19 99.4 137 51.8
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 8.1e-19 97.4 131 49.6
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.1e-18 97.1 127 46.5
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 1.4e-18 96.7 132 50.0
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 2.4e-18 95.9 131 51.1
Gohir.A07G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 3.1e-18 95.5 131 58.0
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 4.0e-18 95.1 130 46.9
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 5.3e-18 94.7 138 47.8
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 6.9e-18 94.4 134 47.0
Gorai.001G099200 Gossypium raimondii HOM05D004793 ORTHO05D004423 1.2e-17 93.6 131 56.5
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.5e-17 93.2 138 48.6
Gohir.D07G092600 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.0e-17 92.8 131 56.5
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.6e-17 92.4 126 45.2
Sed0008787 Sechium edule HOM05D004793 ORTHO05D004423 3.4e-17 92.0 130 46.9
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 4.4e-17 91.7 129 48.8
VMungo0647G0475 Vigna mungo HOM05D004793 ORTHO05D004423 5.8e-17 91.3 138 50.0
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 9.9e-17 90.5 136 43.4
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.2e-16 89.4 127 48.0
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 3.8e-16 88.6 130 52.3
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 3.8e-16 88.6 126 46.8
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 3.8e-16 88.6 131 44.3
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.9e-16 88.2 133 50.4
Eucgr.K00650 Eucalyptus grandis HOM05D004793 ORTHO05D004423 8.4e-16 87.4 133 48.1
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 1.9e-15 86.3 140 43.6
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 1.9e-15 86.3 128 45.3
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.4e-15 85.9 144 43.1
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 3.2e-15 85.5 126 42.9
Phvul.008G285200 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 7.1e-15 84.3 127 47.2
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 9.3e-15 84.0 126 43.7
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 1.2e-14 83.6 131 48.9
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 1.6e-14 83.2 141 47.5
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 2.1e-14 82.8 145 41.4
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 2.1e-14 82.8 140 43.6
Oeu057608.1 Olea europaea HOM05D004793 ORTHO05D004423 2.7e-14 82.4 129 48.8
Oeu064364.1 Olea europaea HOM05D004793 ORTHO05D004423 2.7e-14 82.4 129 48.8
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 3.5e-14 82.0 125 43.2
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 3.5e-14 82.0 125 43.2
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.0e-13 80.5 100 46.0
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.0e-13 80.5 129 45.0
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 1.3e-13 80.1 92 55.4
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 1.3e-13 80.1 131 46.6
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 2.3e-13 79.3 136 44.9
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 2.3e-13 79.3 138 42.8
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.0e-13 79.0 127 43.3
Lsat_1_v5_gn_5_121620 Lactuca sativa HOM05D004793 ORTHO05D004423 3.0e-13 79.0 133 47.4
MELO3C024110.2 Cucumis melo HOM05D004793 ORTHO05D004423 3.9e-13 78.6 133 44.4
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 3.9e-13 78.6 136 44.1
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 3.3e-12 75.5 115 49.6
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 4.3e-12 75.1 139 43.9
Eucgr.A01045 Eucalyptus grandis HOM05D004793 ORTHO05D004423 4.3e-12 75.1 137 44.5
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.6e-12 74.7 126 44.4
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.6e-12 74.7 126 44.4
Haze_12687 Corylus avellana HOM05D004793 ORTHO05D004423 7.4e-12 74.3 138 42.0
Lalb_Chr04g0247291 Lupinus albus HOM05D004793 ORTHO05D004423 9.6e-12 73.9 127 46.5
Lalb_Chr04g0247481 Lupinus albus HOM05D004793 ORTHO05D004423 9.6e-12 73.9 127 46.5
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.3e-11 73.6 130 42.3
ClCG02G002720 Citrullus lanatus HOM05D000222 ORTHO05D003997 1.3e-11 73.6 115 47.8
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 1.6e-11 73.2 131 43.5
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.8e-11 72.4 156 41.0
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 2.8e-11 72.4 142 43.0
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 3.6e-11 72.0 131 42.0
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.8e-11 71.6 130 42.3
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 4.8e-11 71.6 150 39.3
Lsat_1_v5_gn_7_95461 Lactuca sativa HOM05D004793 ORTHO05D004423 2.4e-10 69.3 142 44.4
Rhsim04G0038500 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.4e-10 69.3 131 47.3
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 2.4e-10 69.3 142 39.4
ECA234G3783 Erigeron canadensis HOM05D004793 ORTHO05D004423 3.1e-10 68.9 158 38.6
DCAR_019706 Daucus carota HOM05D004793 ORTHO05D004423 4.0e-10 68.6 138 39.1
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 4.0e-10 68.6 131 40.5
CsaV3_7G023710 Cucumis sativus L. HOM05D004793 ORTHO05D004423 5.3e-10 68.2 82 53.7
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 9.0e-10 67.4 132 40.2
CAN.G294.21 Capsicum annuum HOM05D004793 ORTHO05D004423 9.0e-10 67.4 133 38.3
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 9.0e-10 67.4 146 39.7
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 1.2e-09 67.0 124 42.7
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 1.2e-09 67.0 140 38.6
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 1.5e-09 66.6 140 40.7
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 1.5e-09 66.6 142 41.5
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 2.6e-09 65.9 154 40.9
MSTRG.16038 Avicennia marina HOM05D004793 ORTHO05D004423 3.4e-09 65.5 128 43.0
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 3.4e-09 65.5 154 38.3
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 3.4e-09 65.5 138 39.9
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 4.5e-09 65.1 140 41.4
Oeu029974.1 Olea europaea HOM05D027131 ORTHO05D013900 4.5e-09 65.1 93 46.2
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.8e-09 64.7 126 40.5
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 5.8e-09 64.7 126 40.5
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 5.8e-09 64.7 140 40.0
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 5.8e-09 64.7 133 40.6
HPP92_012227 Vanilla planifolia HOM05D004793 ORTHO05D004423 7.6e-09 64.3 123 38.2
Cc02_g34950 Coffea canephora HOM05D004793 ORTHO05D004423 9.9e-09 63.9 142 37.3
DCAR_002230 Daucus carota HOM05D004793 ORTHO05D004423 9.9e-09 63.9 145 37.9
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 1.3e-08 63.5 154 38.3
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 1.7e-08 63.2 153 38.6
SalBow7G3719 Salvia bowleyana HOM05D004793 ORTHO05D004423 2.2e-08 62.8 129 41.1
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.9e-08 62.4 152 36.2
FAN16G3200 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.9e-08 61.6 124 46.0
FAN21G3338 Fragaria x ananassa HOM05D017646 ORTHO05D004423 4.9e-08 61.6 123 44.7
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 4.9e-08 61.6 161 36.6
Sopen07g024260 Solanum pennellii HOM05D037802 ORTHO05D004423 6.4e-08 61.2 116 44.0
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 8.4e-08 60.8 126 36.5
Solyc07g047827.1 Solanum lycopersicum HOM05D037802 ORTHO05D004423 8.4e-08 60.8 116 44.0
Migut.M00035 Erythranthe guttata HOM05D004793 ORTHO05D004423 1.1e-07 60.5 131 40.5
FvH4_3g24120 Fragaria vesca HOM05D017646 ORTHO05D004423 1.1e-07 60.5 123 43.9
FAN11G0385 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.1e-07 60.5 123 43.9
FAN25G0781 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.1e-07 60.5 123 43.9
FAN25G3449 Fragaria x ananassa HOM05D017646 ORTHO05D004423 1.1e-07 60.5 123 43.9
Zm00001eb049820 Zea mays HOM05D004793 ORTHO05D004423 1.4e-07 60.1 123 39.0
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 1.9e-07 59.7 126 36.5
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 1.9e-07 59.7 130 42.3
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.4e-07 59.3 152 36.2
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 3.2e-07 58.9 150 38.0
Oeu063642.1 Olea europaea HOM05D004793 ORTHO05D004423 3.2e-07 58.9 129 37.2
CAN.G1397.7 Capsicum annuum HOM05D037802 ORTHO05D004423 5.5e-07 58.2 134 38.8
CDE04G0094 Ceratophyllum demersum HOM05D004793 ORTHO05D004423 5.5e-07 58.2 126 38.9
RcHm_v2.0_Chr5g0042781 Rosa chinensis HOM05D017646 ORTHO05D004423 5.5e-07 58.2 121 43.8
HPP92_014035 Vanilla planifolia HOM05D004793 ORTHO05D004423 7.1e-07 57.8 128 40.6
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 9.3e-07 57.4 126 38.9
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.2e-06 57.0 153 34.6
ATR0712G036 Amborella trichopoda HOM05D004793 ORTHO05D004423 1.6e-06 56.6 132 39.4
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 2.7e-06 55.8 138 34.1
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 2.7e-06 55.8 126 34.9
Os03g0593100 Oryza sativa ssp. japonica HOM05D004793 ORTHO05D004423 3.5e-06 55.5 142 34.5
Oeu030108.1 Olea europaea HOM05D026462 ORTHO05D049473 4.6e-06 55.1 107 40.2
MSTRG.6642 Avicennia marina HOM05D004793 ORTHO05D004423 6.0e-06 54.7 126 37.3


User provided reference genes

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