Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G185600 Theobroma cacao HOM05D007186 ORTHO05D008970 8.2e-76 287.0 143 100.0
Duzib138G0377 Durio zibethinus HOM05D007186 ORTHO05D008970 1.3e-36 156.8 102 77.5
Gohir.A07G189700 Gossypium hirsutum HOM05D007186 ORTHO05D008970 2.7e-34 149.1 91 85.7
Gohir.D07G195800 Gossypium hirsutum HOM05D007186 ORTHO05D008970 2.7e-34 149.1 91 85.7
COL.COLO4_06941 Corchorus olitorius HOM05D007186 ORTHO05D008970 7.8e-34 147.5 91 79.1
Gorai.001G219300 Gossypium raimondii HOM05D007186 ORTHO05D008970 7.8e-34 147.5 91 84.6
QL08p029418 Quercus lobata HOM05D007186 ORTHO05D008970 2.3e-30 136.0 85 75.3
TWI36G0211 Tripterygium wilfordii HOM05D007186 ORTHO05D008970 2.3e-30 136.0 86 79.1
Dinv07835 Davidia involucrata HOM05D007186 ORTHO05D008970 5.2e-30 134.8 99 71.7
Manes.13G063846 Manihot esculenta HOM05D007186 ORTHO05D008970 8.9e-30 134.0 94 77.7
RcHm_v2.0_Chr2g0157151 Rosa chinensis HOM05D007186 ORTHO05D008970 8.9e-30 134.0 91 72.5
FAN05G2361 Fragaria x ananassa HOM05D007186 ORTHO05D008970 2.0e-29 132.9 91 72.5
FvH4_6g41490 Fragaria vesca HOM05D007186 ORTHO05D008970 3.4e-29 132.1 91 72.5
FAN14G0401 Fragaria x ananassa HOM05D007186 ORTHO05D008970 3.4e-29 132.1 91 72.5
FAN09G3526 Fragaria x ananassa HOM05D007186 ORTHO05D008970 4.4e-29 131.7 91 71.4
Prupe.3G204800 Prunus persica HOM05D007186 ORTHO05D008970 4.4e-29 131.7 91 72.5
Ciclev10016992m.g Citrus clementina HOM05D007186 ORTHO05D008970 7.5e-29 131.0 91 69.2
vmacro12130 Vaccinium macrocarpon HOM05D007186 ORTHO05D008970 7.5e-29 131.0 88 76.1
MD09G1119400 Malus domestica HOM05D007186 ORTHO05D008970 1.3e-28 130.2 91 71.4
Sabra14G0124100 Salix brachista HOM05D007186 ORTHO05D008970 1.7e-28 129.8 102 65.7
GSVIVG01030422001 Vitis vinifera HOM05D007186 ORTHO05D008970 1.7e-28 129.8 90 74.4
CiPaw.04G194300 Carya illinoinensis HOM05D007186 ORTHO05D008970 2.9e-28 129.0 98 67.3
Actinidia07891 Actinidia chinensis HOM05D007186 ORTHO05D008970 3.7e-28 128.6 89 73.0
CSS0038956 Camellia sinensis var. sinensis HOM05D007186 ORTHO05D008970 4.9e-28 128.3 92 73.9
VMungo0647G1315 Vigna mungo HOM05D007186 ORTHO05D008970 6.4e-28 127.9 91 72.5
Potri.014G162700 Populus trichocarpa HOM05D007186 ORTHO05D008970 1.8e-27 126.3 90 73.3
Atru.chr6.3329 Acer truncatum HOM05D007186 ORTHO05D008970 2.4e-27 125.9 92 72.8
Phvul.008G287400 Phaseolus vulgaris HOM05D007186 ORTHO05D008970 2.4e-27 125.9 86 70.9
PGSC0003DMG400030273 Solanum tuberosum HOM05D007186 ORTHO05D008970 2.4e-27 125.9 108 65.7
FAN02G3692 Fragaria x ananassa HOM05D007186 ORTHO05D008970 4.1e-27 125.2 93 67.7
Medtr5g097970 Medicago truncatula HOM05D007186 ORTHO05D008970 5.4e-27 124.8 91 69.2
Nitab4.5_0011275g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 5.4e-27 124.8 84 72.6
Eucgr.K00670 Eucalyptus grandis HOM05D007186 ORTHO05D008970 9.2e-27 124.0 78 74.4
Lj8A132T57 Lonicera japonica HOM05D007186 ORTHO05D008970 1.2e-26 123.6 100 67.0
Rhsim06G0171800 Rhododendron simsii HOM05D007186 ORTHO05D008970 1.2e-26 123.6 77 77.9
EL10Ac9g22768 Beta vulgaris HOM05D007186 ORTHO05D008970 2.7e-26 122.5 86 73.3
AUR62017547 Chenopodium quinoa HOM05D007186 ORTHO05D008970 2.7e-26 122.5 94 67.0
Sopen05g025420 Solanum pennellii HOM05D007186 ORTHO05D008970 3.5e-26 122.1 104 65.4
AUR62015089 Chenopodium quinoa HOM05D007186 ORTHO05D008970 4.6e-26 121.7 94 64.9
AUR62044229 Chenopodium quinoa HOM05D007186 ORTHO05D008970 4.6e-26 121.7 94 64.9
AUR62044345 Chenopodium quinoa HOM05D007186 ORTHO05D008970 4.6e-26 121.7 94 64.9
Hma1.2p1_0133F.1_g061060 Hydrangea macrophylla HOM05D007186 ORTHO05D008970 6.0e-26 121.3 81 74.1
TPR.G15068 Trifolium pratense HOM05D007186 ORTHO05D008970 6.0e-26 121.3 85 68.2
Glyma.02G307400 Glycine max HOM05D007186 ORTHO05D008970 1.0e-25 120.6 85 70.6
Glyma.14G005600 Glycine max HOM05D007186 ORTHO05D008970 1.0e-25 120.6 86 69.8
LjContig00081g0025535 Lotus japonicus HOM05D000229 ORTHO05D008970 1.0e-25 120.6 85 69.4
Solyc05g041430.3 Solanum lycopersicum HOM05D007186 ORTHO05D008970 1.0e-25 120.6 104 64.4
Haze_12721 Corylus avellana HOM05D007186 ORTHO05D008970 2.3e-25 119.4 129 51.2
Peaxi162Scf00147g01818 Petunia axillaris HOM05D007186 ORTHO05D008970 3.0e-25 119.0 97 63.9
TAR624G0839 Trochodendron aralioides HOM05D007186 ORTHO05D008970 3.0e-25 119.0 88 68.2
MSTRG.6661 Avicennia marina HOM05D007186 ORTHO05D008970 8.6e-25 117.5 91 68.1
Nitab4.5_0002877g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 8.6e-25 117.5 84 71.4
CANSAT54G2500 Cannabis sativa HOM05D007186 ORTHO05D008970 4.3e-24 115.2 99 58.6
PSO675G5362 Papaver somniferum HOM05D007186 ORTHO05D008970 4.3e-24 115.2 88 62.5
MELO3C019365.2 Cucumis melo HOM05D007186 ORTHO05D008970 1.2e-23 113.6 89 68.5
CsaV3_6G009340 Cucumis sativus L. HOM05D007186 ORTHO05D008970 1.6e-23 113.2 82 69.5
ClCG02G009490 Citrullus lanatus HOM05D007186 ORTHO05D008970 2.1e-23 112.8 83 68.7
Psat2g003840 Pisum sativum HOM05D007186 ORTHO05D008970 2.8e-23 112.5 91 64.8
MBI19_g06151_MAGBIO Magnolia biondii HOM05D007186 ORTHO05D008970 3.6e-23 112.1 78 70.5
Hund24136 Selenicereus undatus HOM05D007186 ORTHO05D008970 3.6e-23 112.1 94 60.6
PGR142G1014 Punica granatum HOM05D007186 ORTHO05D008970 1.4e-22 110.2 92 60.9
HPP92_022801 Vanilla planifolia HOM05D007186 ORTHO05D008970 3.1e-22 109.0 91 59.3
Sed0024069 Sechium edule HOM05D007186 ORTHO05D008970 8.9e-22 107.5 87 66.7
arahy.Tifrunner.gnm1.ann1.HI5B62 Arachis hypogaea HOM05D007186 ORTHO05D008970 2.0e-21 106.3 92 56.5
Carub.0003s2639 Capsella rubella HOM05D007186 ORTHO05D008970 2.0e-21 106.3 102 53.9
ECA240G1183 Erigeron canadensis HOM05D007186 ORTHO05D008970 2.0e-21 106.3 95 62.1
THA.LOC104808856 Tarenaya hassleriana HOM05D007186 ORTHO05D008970 2.6e-21 105.9 84 61.9
BraA03t13576Z Brassica rapa HOM05D007186 ORTHO05D008970 1.3e-20 103.6 87 57.5
A03p44430 Brassica napus HOM05D007186 ORTHO05D008970 1.7e-20 103.2 87 57.5
arahy.Tifrunner.gnm1.ann1.CRYT1U Arachis hypogaea HOM05D007186 ORTHO05D008970 2.9e-20 102.4 87 59.8
HanXRQChr03g0075731 Helianthus annuus HOM05D007186 ORTHO05D008970 3.7e-20 102.1 88 63.6
C03p55060 Brassica napus HOM05D007186 ORTHO05D008970 6.4e-20 101.3 87 56.3
BolC3t17781H Brassica oleracea HOM05D007186 ORTHO05D008970 6.4e-20 101.3 87 56.3
Lsat_1_v5_gn_9_105540 Lactuca sativa HOM05D007186 ORTHO05D008970 8.3e-20 100.9 76 67.1
Lalb_Chr04g0247191 Lupinus albus HOM05D007186 ORTHO05D008970 8.3e-20 100.9 85 60.0
Aqoxy1G02832 Aquilegia oxysepala HOM05D007186 ORTHO05D008970 1.4e-19 100.1 89 55.1
BcaC01g03185 Brassica carinata HOM05D007186 ORTHO05D008970 2.4e-19 99.4 87 54.0
BcaC01g03189 Brassica carinata HOM05D007186 ORTHO05D008970 3.2e-19 99.0 87 55.2
Sp3g23400 Schrenkiella parvula HOM05D007186 ORTHO05D008970 5.4e-19 98.2 85 56.5
C03p55120 Brassica napus HOM05D007186 ORTHO05D008970 7.0e-19 97.8 87 52.9
BolC3t17784H Brassica oleracea HOM05D007186 ORTHO05D008970 7.0e-19 97.8 87 52.9
Zm00001eb245650 Zea mays HOM05D007186 ORTHO05D008970 1.2e-18 97.1 74 64.9
unitig_578.g16640 Utricularia gibba HOM05D007186 ORTHO05D008970 1.6e-18 96.7 98 51.0
Thhalv10002690m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 2.1e-18 96.3 86 54.7
AL3G42380 Arabidopsis lyrata HOM05D007186 ORTHO05D008970 1.7e-17 93.2 102 52.9
CARHR102760 Cardamine hirsuta HOM05D007186 ORTHO05D008970 1.7e-17 93.2 100 52.0
AUR62025215 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.7e-17 93.2 68 66.2
Aa31sc53G20 Aethionema arabicum HOM05D007186 ORTHO05D006113 3.3e-16 89.0 85 54.1
Os02g0588600 Oryza sativa ssp. japonica HOM05D007186 ORTHO05D008970 4.3e-16 88.6 74 59.5
SalBow7G1582 Salvia bowleyana HOM05D000037 ORTHO05D000150 5.6e-16 88.2 93 57.0
ATR0712G003 Amborella trichopoda HOM05D007186 ORTHO05D008970 2.1e-15 86.3 71 59.2
Migut.M00010 Erythranthe guttata HOM05D007186 ORTHO05D008970 6.2e-15 84.7 81 61.7
BcaB08g34487 Brassica carinata HOM05D007186 ORTHO05D008970 1.4e-14 83.6 74 55.4
AUR62044292 Chenopodium quinoa HOM05D007186 ORTHO05D008970 6.8e-14 81.3 92 52.2
Sopen05g025410 Solanum pennellii HOM05D007186 ORTHO05D008970 6.8e-14 81.3 60 73.3
SEGI_21441 Sequoiadendron giganteum HOM05D007186 ORTHO05D008970 2.0e-13 79.7 77 51.9
BcaC01g03187 Brassica carinata HOM05D007186 ORTHO05D008970 4.9e-12 75.1 65 52.3
AT2G04790 Arabidopsis thaliana HOM05D007186 ORTHO05D008970 8.6e-09 64.3 60 61.7
MD17G1110300 Malus domestica HOM05D007186 ORTHO05D008970 1.1e-08 63.9 39 76.9
Pp3c15_5880 Physcomitrium patens HOM05D007186 ORTHO05D008970 5.6e-08 61.6 108 38.0
Oeu040479.1 Olea europaea HOM05D007186 ORTHO05D008970 1.4e-06 57.0 41 70.7


User provided reference genes

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