Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 0.0e+00 1114.0 576 100.0
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.2e-288 994.6 594 86.4
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 3.3e-277 958.0 578 84.1
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.3e-276 956.1 574 84.3
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 3.8e-265 917.9 575 81.6
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 2.6e-253 878.6 577 77.3
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 1.7e-249 865.9 578 76.6
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 2.2e-244 849.0 577 74.4
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 4.8e-244 847.8 572 75.2
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 1.6e-239 832.8 577 73.5
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.4e-238 829.7 572 74.0
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 2.6e-237 825.5 572 73.1
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 9.2e-235 817.0 578 72.5
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 2.3e-233 812.4 577 71.1
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 2.5e-232 808.9 577 72.1
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 5.6e-232 807.7 578 75.6
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 8.0e-231 803.9 577 70.5
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.4e-230 803.1 564 72.3
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 2.0e-229 799.3 574 70.6
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 7.5e-229 797.3 570 71.2
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 1.7e-228 796.2 577 70.9
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 2.9e-228 795.4 570 72.3
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 3.7e-228 795.0 569 71.0
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 6.4e-228 794.3 576 71.0
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 8.3e-228 793.9 577 69.3
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.2e-227 792.0 577 70.5
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.0e-226 787.7 587 69.2
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 5.0e-225 784.6 576 69.8
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 1.9e-224 782.7 577 69.5
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 3.3e-224 781.9 577 69.8
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 1.6e-223 779.6 571 71.1
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.2e-223 777.7 570 69.6
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 4.0e-222 775.0 526 75.5
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 5.2e-222 774.6 580 67.8
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 6.8e-222 774.2 569 69.9
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 1.5e-221 773.1 574 70.7
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.2e-220 769.2 582 68.2
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.2e-220 769.2 578 67.1
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 2.4e-219 765.8 569 69.1
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 4.1e-219 765.0 570 70.2
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.2e-218 763.5 571 69.2
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.6e-218 763.1 524 74.2
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 3.5e-218 761.9 580 67.9
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 7.8e-218 760.8 573 69.8
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.0e-217 760.4 577 67.2
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 3.3e-216 755.4 578 68.0
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 4.3e-216 755.0 576 66.0
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 1.2e-215 753.4 598 65.2
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.6e-215 751.9 578 67.8
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 1.1e-214 750.4 575 67.8
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 6.8e-214 747.7 578 68.0
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.2e-213 746.9 577 67.4
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.2e-213 746.9 577 65.9
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 1.2e-213 746.9 618 63.1
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.5e-213 746.5 550 68.7
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.0e-213 746.1 573 66.0
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.3e-212 743.4 516 73.6
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 2.9e-212 742.3 573 65.4
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 3.7e-212 741.9 578 66.4
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 4.9e-212 741.5 573 65.6
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.1e-211 740.3 572 66.1
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 3.2e-211 738.8 578 66.8
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 9.2e-211 737.3 578 67.5
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 4.6e-210 734.9 580 66.2
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 1.7e-209 733.0 587 66.1
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 6.6e-209 731.1 575 65.7
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 6.6e-209 731.1 577 66.6
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 8.6e-209 730.7 573 65.3
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.5e-208 729.2 574 65.2
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 5.6e-208 728.0 596 64.9
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 5.6e-208 728.0 599 64.8
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 5.6e-208 728.0 549 69.2
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.1e-207 726.1 582 64.3
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 8.1e-207 724.2 596 64.9
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 3.1e-206 722.2 575 63.0
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 2.0e-205 719.5 572 64.0
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 2.6e-205 719.2 600 63.8
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 4.4e-205 718.4 552 68.8
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 8.4e-204 714.1 577 65.2
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 9.2e-203 710.7 575 62.1
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 2.8e-199 699.1 597 60.1
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 4.0e-198 695.3 574 60.8
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 9.0e-198 694.1 577 63.3
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 3.8e-196 688.7 577 61.2
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 6.4e-196 688.0 618 57.3
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 3.5e-194 682.2 576 62.2
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 1.0e-193 680.6 529 65.6
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 2.3e-193 679.5 577 61.2
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 3.9e-193 678.7 461 75.3
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 9.0e-190 667.5 528 66.5
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 2.9e-188 662.5 542 64.0
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.2e-186 657.1 576 57.6
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 2.1e-186 656.4 578 58.8
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.3e-185 652.9 543 64.6
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 3.0e-185 652.5 576 57.8
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 6.2e-183 644.8 544 63.8
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 4.0e-174 615.5 529 62.8
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 1.5e-173 613.6 549 62.7
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 2.6e-173 612.8 575 58.8
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 1.7e-172 610.1 571 57.8
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 6.5e-172 608.2 548 57.5
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 1.4e-171 607.1 579 54.9
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.5e-164 581.3 573 54.1
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.5e-157 560.5 530 55.8
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 5.0e-156 555.4 576 52.3
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 1.6e-154 550.4 571 52.2
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 1.1e-150 537.7 394 69.3
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 7.7e-141 505.0 587 45.0
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 5.0e-140 502.3 433 60.0
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 6.5e-140 501.9 576 49.1
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 9.4e-139 498.0 333 76.0
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 2.8e-127 459.9 326 72.7
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 4.5e-117 426.0 287 73.9
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 2.9e-116 423.3 284 75.4
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 1.2e-112 411.4 385 57.4
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.1e-107 394.8 319 63.9
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 8.6e-100 368.6 549 38.1
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 5.8e-96 355.9 284 68.3
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 1.1e-94 351.7 284 63.7
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 4.1e-94 349.7 230 78.3
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 5.6e-83 312.8 349 55.6
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.7e-79 301.2 530 33.2
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 3.5e-77 293.5 177 82.5
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.0e-76 290.4 303 54.1
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 9.3e-70 268.9 540 31.3
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 2.7e-69 267.3 217 61.3
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.3e-66 258.5 208 63.5
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 5.1e-60 236.5 634 27.6
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 7.6e-56 222.6 285 46.0
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 2.3e-44 184.5 140 67.9
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 5.7e-35 153.3 160 46.9
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.1e-33 149.1 160 50.6
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 1.2e-29 135.6 85 72.9
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 3.0e-28 131.0 85 71.8
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 2.0e-27 128.3 108 63.9
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 8.2e-26 122.9 88 68.2
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 1.4e-20 105.5 149 39.6
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.7e-19 100.1 72 68.1
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 1.1e-17 95.9 112 47.3
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.5e-15 86.3 174 37.4
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.9e-14 85.1 93 51.6
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.1e-13 81.6 70 61.4
CBR_g3444 Chara braunii HOM05D000019 ORTHO05D000353 4.7e-13 80.5 87 42.5
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 1.6e-08 65.5 107 40.2
SHI10093 Sapria himalayana HOM05D004734 ORTHO05D006019 1.9e-06 58.5 72 41.7
arahy.Tifrunner.gnm1.ann1.RUY2TK Arachis hypogaea HOM05D005906 ORTHO05D007359 2.5e-06 58.2 35 82.9
Glyma.20G074700 Glycine max HOM05D004734 ORTHO05D213795 9.5e-06 56.2 43 67.4


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