Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 0.0e+00 1342.0 667 100.0
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 0.0e+00 1162.9 660 88.5
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 0.0e+00 1110.5 658 85.3
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 0.0e+00 1094.0 669 83.4
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 0.0e+00 1088.9 659 84.1
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 0.0e+00 1080.9 669 82.5
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 5.4e-271 937.6 673 71.0
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 3.6e-267 924.9 671 71.7
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 5.8e-265 917.5 667 70.9
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 2.1e-262 909.1 666 72.1
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 3.5e-262 908.3 674 70.5
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 7.8e-262 907.1 669 70.0
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 7.3e-260 900.6 661 71.9
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 1.2e-259 899.8 673 68.8
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 1.4e-258 896.3 665 70.5
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 2.0e-257 892.5 658 71.0
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 9.9e-257 890.2 673 69.5
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 6.4e-256 887.5 678 66.8
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 1.6e-254 882.9 664 70.0
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 3.4e-249 865.1 664 69.1
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.1e-246 855.9 667 66.9
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 5.1e-245 851.3 688 66.1
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 6.6e-245 850.9 664 68.7
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 2.8e-243 845.5 662 66.9
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.8e-240 835.1 670 67.0
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 8.4e-240 833.9 661 66.6
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.4e-239 833.2 671 66.8
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 7.1e-239 830.9 685 65.8
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.2e-238 830.1 667 66.7
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 6.0e-238 827.8 668 66.6
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 1.0e-237 827.0 663 66.8
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.0e-237 825.5 670 66.4
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 3.9e-237 825.1 680 65.9
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 8.7e-237 823.9 660 65.3
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 1.3e-235 820.1 661 66.0
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 4.0e-234 815.1 671 65.3
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 5.3e-234 814.7 670 65.5
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 1.2e-233 813.5 677 64.7
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 2.0e-233 812.8 677 64.8
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 2.6e-233 812.4 669 64.7
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 2.6e-233 812.4 666 64.1
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 2.9e-232 808.9 678 65.5
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 2.9e-232 808.9 670 64.3
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 8.4e-232 807.4 661 64.9
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 2.7e-230 802.4 669 64.7
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 3.5e-230 802.0 673 64.6
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 6.0e-230 801.2 596 69.1
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 1.0e-229 800.4 675 63.1
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 1.8e-229 799.7 661 64.1
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.3e-229 799.3 673 64.8
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 5.1e-229 798.1 674 64.2
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 5.1e-229 798.1 664 64.6
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 8.7e-229 797.3 671 64.8
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 8.7e-229 797.3 675 62.7
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 1.5e-228 796.6 672 64.0
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 1.9e-228 796.2 673 64.0
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 1.6e-227 793.1 649 63.8
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 3.7e-227 792.0 670 63.9
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 4.8e-227 791.6 673 64.0
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 1.1e-226 790.4 664 63.0
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 1.8e-226 789.6 666 64.4
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 1.8e-226 789.6 663 63.2
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 5.8e-225 784.6 677 63.1
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.0e-224 783.9 681 62.4
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 1.3e-224 783.5 685 62.6
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 1.7e-224 783.1 658 64.0
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 2.5e-223 779.2 663 62.1
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 7.1e-223 777.7 666 62.0
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 1.3e-221 773.5 663 62.0
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 1.3e-221 773.5 662 62.4
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 3.9e-221 771.9 665 63.6
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 1.1e-220 770.4 707 61.0
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 1.9e-220 769.6 662 62.5
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 5.7e-220 768.1 662 62.1
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 7.4e-220 767.7 658 61.2
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 1.3e-219 766.9 678 61.2
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 2.1e-219 766.1 658 61.2
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 6.2e-219 764.6 658 61.2
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 8.2e-219 764.2 679 59.9
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 1.5e-217 760.0 671 60.8
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 8.4e-216 754.2 678 61.2
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 1.1e-215 753.8 670 60.3
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 9.3e-215 750.7 664 61.7
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 6.1e-214 748.0 672 60.0
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 7.9e-214 747.7 658 60.5
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 7.9e-214 747.7 672 59.2
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 1.0e-213 747.3 667 61.9
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 3.0e-213 745.7 672 59.5
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 9.7e-212 740.7 580 66.9
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 1.6e-211 740.0 679 58.3
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 3.1e-210 735.7 676 59.3
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 1.7e-208 729.9 687 57.8
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 2.9e-208 729.2 670 60.1
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 5.0e-208 728.4 666 59.9
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 2.5e-207 726.1 673 60.6
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 1.0e-205 720.7 680 57.8
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.0e-205 720.7 717 55.4
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 8.8e-205 717.6 687 58.7
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 1.5e-204 716.8 696 56.9
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 2.5e-204 716.1 664 57.8
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 1.3e-203 713.8 665 59.7
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 2.2e-203 713.0 667 59.4
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 2.8e-203 712.6 511 73.0
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 2.8e-203 712.6 667 59.8
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 3.8e-200 702.2 690 55.7
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.4e-197 693.7 699 55.7
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 5.1e-197 691.8 593 62.1
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 5.0e-192 675.2 684 55.1
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 1.5e-191 673.7 662 57.3
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 5.5e-191 671.8 710 53.8
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 1.7e-187 660.2 652 56.1
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 1.8e-186 656.8 440 76.4
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 3.1e-186 656.0 661 55.8
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 4.1e-186 655.6 664 56.5
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 5.3e-186 655.2 721 53.1
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 1.2e-185 654.1 666 55.9
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 1.0e-184 651.0 655 56.8
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 8.5e-184 647.9 628 59.1
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 1.6e-182 643.7 674 52.7
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 3.4e-180 636.0 654 55.2
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 4.8e-179 632.1 508 67.1
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 5.9e-177 625.2 503 64.8
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 2.3e-173 613.2 660 52.3
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.4e-170 604.0 654 53.7
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 1.8e-170 603.6 662 52.3
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 5.4e-170 602.1 512 62.5
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 9.5e-167 591.3 690 49.7
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 2.0e-161 573.5 690 48.8
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.6e-158 563.9 527 59.2
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 2.4e-154 550.1 546 57.1
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 3.2e-154 549.7 680 49.6
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 3.0e-152 543.1 624 50.8
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 6.8e-149 531.9 668 49.7
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 3.2e-146 523.1 502 60.0
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 4.1e-146 522.7 460 63.0
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 6.0e-137 492.3 652 47.5
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 2.3e-128 463.8 489 54.2
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 5.6e-127 459.1 444 60.1
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.8e-125 454.1 589 46.5
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.5e-119 433.7 599 45.7
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 1.4e-117 427.9 696 41.5
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 3.5e-113 413.3 371 63.1
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 8.1e-110 402.1 711 39.1
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 5.3e-109 399.4 574 45.3
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 4.9e-107 392.9 266 77.8
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 3.2e-106 390.2 696 39.5
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 7.1e-106 389.0 353 61.5
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 7.2e-98 362.5 282 62.8
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 3.9e-96 356.7 406 48.5
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 2.4e-93 347.4 697 36.9
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 8.5e-91 339.0 292 63.7
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 1.7e-86 324.7 799 33.4
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 5.0e-75 286.6 329 48.0
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 8.5e-75 285.8 255 62.7
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 9.4e-74 282.3 315 47.3
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 2.2e-70 271.2 411 42.8
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 1.1e-66 258.8 699 32.6
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 4.0e-64 250.4 615 33.5
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 7.7e-60 236.1 218 57.3
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 1.1e-50 205.7 231 54.1
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 1.1e-42 179.1 256 43.4
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 4.4e-39 167.2 795 25.4
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 2.1e-33 148.3 139 56.1
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 4.4e-31 140.6 164 53.0
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 5.1e-27 127.1 130 54.6
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 2.4e-21 108.2 87 59.8
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 7.1e-21 106.7 85 63.5
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 2.7e-20 104.8 105 55.2
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 3.5e-20 104.4 61 86.9
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 1.0e-19 102.8 106 49.1
Rhsim07G0255900 Rhododendron simsii HOM05D000234 ORTHO05D004288 9.6e-18 96.3 112 50.0
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 1.2e-17 95.9 67 65.7
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.8e-16 92.0 110 50.9
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 4.0e-16 90.9 66 65.2
SHI10371 Sapria himalayana HOM05D003691 ORTHO05D004288 2.6e-15 88.2 89 59.6
FAN16G1928 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.9e-13 82.0 93 49.5
Lj8A127T49 Lonicera japonica HOM05D003691 ORTHO05D004288 1.9e-13 82.0 79 60.8
TPR.G2961 Trifolium pratense HOM05D001978 ORTHO05D003036 2.4e-13 81.6 54 63.0
TPR.G35222 Trifolium pratense HOM05D003691 ORTHO05D004288 2.1e-12 78.6 59 62.7
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 3.5e-12 77.8 49 71.4
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-11 75.1 68 60.3
MD17G1101200 Malus domestica HOM05D003691 ORTHO05D004288 5.1e-11 73.9 90 44.4
Dinv17119 Davidia involucrata HOM05D003691 ORTHO05D004288 6.2e-09 67.0 83 43.4
Actinidia03601 Actinidia chinensis HOM05D003691 ORTHO05D004288 9.0e-08 63.2 51 60.8
MD17G1101000 Malus domestica HOM05D003691 ORTHO05D004288 1.5e-07 62.4 47 61.7
Dinv18681 Davidia involucrata HOM05D003691 ORTHO05D004288 8.4e-06 56.6 48 54.2


User provided reference genes

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