Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 0.0e+00 1633.2 865 100.0
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 0.0e+00 1086.6 858 73.5
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 3.7e-288 995.0 859 68.9
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 6.0e-214 748.4 859 54.4
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 8.4e-200 701.4 859 52.0
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 6.0e-198 695.3 859 51.8
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 1.1e-143 515.0 449 70.6
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 1.4e-125 454.9 371 67.9
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.7e-120 438.0 357 68.1
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 3.5e-81 307.4 897 32.8
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 6.0e-81 306.6 923 33.6
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 1.3e-72 278.9 905 32.0
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 6.3e-70 270.0 402 44.5
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 2.6e-68 264.6 392 45.7
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 3.4e-68 264.2 402 44.0
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.2e-65 255.8 401 43.6
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 3.6e-65 254.2 889 30.3
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 1.0e-64 252.7 878 30.4
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.3e-62 245.7 894 31.0
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 3.1e-61 241.1 865 28.3
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 6.9e-61 240.0 404 40.6
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 1.2e-60 239.2 392 44.4
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 2.9e-59 234.6 896 30.2
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 2.9e-59 234.6 518 38.4
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 3.8e-59 234.2 421 38.7
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 8.5e-59 233.0 873 28.3
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 1.1e-58 232.6 454 38.8
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 3.2e-58 231.1 908 29.6
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 9.4e-58 229.6 870 27.8
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 2.3e-56 224.9 448 38.2
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 6.7e-56 223.4 907 28.8
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 1.5e-55 222.2 765 28.9
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 9.7e-55 219.5 470 37.9
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 4.8e-54 217.2 889 29.7
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.8e-54 217.2 875 29.7
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.4e-53 215.7 893 28.7
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 4.1e-53 214.2 409 37.7
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 5.3e-53 213.8 600 33.3
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 2.6e-52 211.5 876 27.5
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.5e-52 211.1 398 39.2
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.3e-51 209.1 436 36.9
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 6.5e-51 206.8 336 40.5
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 7.2e-50 203.4 400 37.5
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.2e-49 202.6 440 37.3
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 3.6e-49 201.1 899 29.6
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 1.4e-48 199.1 899 28.3
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 2.3e-48 198.4 329 42.6
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 4.0e-48 197.6 374 38.8
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 9.7e-47 193.0 460 33.7
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 2.4e-45 188.3 393 37.7
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 2.4e-45 188.3 476 33.0
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 5.3e-45 187.2 425 35.5
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 2.0e-44 185.3 240 47.9
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.3e-43 182.6 380 36.1
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 5.0e-43 180.6 424 34.0
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 1.9e-42 178.7 424 33.5
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 3.2e-42 177.9 498 32.3
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 3.2e-42 177.9 374 35.6
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.2e-42 177.6 441 34.2
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 2.7e-41 174.9 884 26.9
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 8.0e-41 173.3 476 32.6
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 8.8e-40 169.9 867 29.3
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 8.8e-40 169.9 866 27.1
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.2e-39 169.5 585 30.1
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.4e-39 167.5 441 33.1
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 7.5e-39 166.8 605 30.1
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 9.8e-39 166.4 232 44.0
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.2e-38 165.2 558 29.7
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 9.1e-37 159.8 610 30.5
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 9.1e-37 159.8 610 30.5
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 9.1e-37 159.8 558 29.4
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 3.5e-36 157.9 556 30.8
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.5e-36 157.5 561 29.1
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.0e-35 156.4 795 27.3
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.9e-35 154.8 558 29.2
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 5.0e-35 154.1 726 27.3
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 4.2e-34 151.0 554 29.8
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.5e-34 149.8 570 28.4
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.2e-33 149.4 407 32.2
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.6e-33 149.1 288 39.2
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 2.7e-33 148.3 288 39.2
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 6.1e-33 147.1 591 27.2
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 3.0e-32 144.8 873 25.5
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 4.0e-32 144.4 645 27.6
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 4.0e-32 144.4 595 29.2
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 6.8e-32 143.7 858 25.8
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 8.8e-32 143.3 595 28.9
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.5e-31 142.5 902 25.8
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.6e-31 141.7 275 38.9
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 5.7e-31 140.6 426 31.9
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 9.8e-31 139.8 730 27.0
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.2e-30 138.7 918 27.3
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 3.7e-30 137.9 417 32.4
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 6.3e-30 137.1 415 30.8
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 1.6e-28 132.5 332 33.4
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 2.0e-28 132.1 511 28.6
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 3.5e-28 131.3 858 23.7
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 5.9e-28 130.6 873 23.6
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 1.3e-27 129.4 234 38.5
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.7e-27 129.0 451 30.4
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 8.6e-27 126.7 252 36.5
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 9.5e-26 123.2 577 26.2
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 2.1e-25 122.1 989 25.9
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.8e-25 121.7 935 26.1
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 4.7e-25 120.9 333 32.4
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 2.3e-24 118.6 343 31.5
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 8.9e-24 116.7 448 29.5
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 3.7e-22 111.3 246 35.4
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 2.7e-20 105.1 954 24.3
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.6e-20 104.4 348 28.7
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 5.9e-20 104.0 147 40.1
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 1.3e-19 102.8 476 27.5
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.1e-18 99.8 392 29.1
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.5e-18 99.4 785 25.2
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 1.5e-18 99.4 111 49.5
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 4.3e-18 97.8 526 26.6
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 9.5e-18 96.7 207 36.7
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 8.0e-17 93.6 257 32.7
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.0e-16 93.2 887 23.4
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 2.6e-15 88.6 233 30.5
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.3e-11 76.3 478 33.3
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 3.0e-11 75.1 104 43.3
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 5.0e-11 74.3 764 22.9
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 6.2e-09 67.4 107 44.9
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.1e-08 65.1 348 25.6
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.0e-07 62.4 139 38.8
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.0e-07 62.4 139 38.8
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 4.9e-06 57.8 95 42.1


User provided reference genes

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