Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 2728.4 1391 100.0
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 2377.4 1378 88.4
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 2269.2 1379 84.0
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 2264.2 1379 84.0
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1799.6 1375 68.9
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1786.9 1382 68.5
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1768.1 1385 67.2
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1762.7 1351 67.7
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1758.8 1424 66.6
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1753.0 1388 66.7
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1733.4 1390 65.7
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1723.0 1356 67.1
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1722.2 1352 66.6
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1700.3 1348 65.9
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1679.8 1353 65.9
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1679.5 1394 64.1
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1669.8 1384 64.6
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1655.2 1287 67.8
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1649.4 1370 64.5
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1644.4 1379 63.2
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1644.0 1366 64.1
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1631.3 1368 62.6
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1625.9 1357 63.4
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1549.6 1376 60.3
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1535.8 1431 58.1
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1521.1 1366 59.7
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1497.3 1324 59.5
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1492.6 1371 59.4
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1491.9 1371 59.4
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1491.1 1362 59.5
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1489.6 1366 58.7
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1485.3 1350 58.4
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1484.5 1355 58.3
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1483.0 1379 58.4
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1476.1 926 81.6
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1474.5 1410 57.9
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1474.1 1379 58.2
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1471.1 1374 59.0
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1469.5 1438 56.6
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1469.1 1356 59.5
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1468.0 1356 59.4
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1468.0 1371 59.0
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1465.3 1355 59.3
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1464.9 1386 57.8
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1454.5 1203 64.1
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1432.5 1378 56.5
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1430.2 1390 56.8
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1413.3 1377 56.8
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1393.6 1368 53.5
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1392.9 1416 55.2
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1334.7 1333 55.9
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1326.6 1452 52.8
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1318.1 1440 51.9
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1298.5 1364 54.3
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1298.5 1460 50.9
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1244.2 1250 55.9
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 2.1e-309 1066.2 967 59.8
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 4.2e-302 1042.0 965 58.8
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.2e-301 1040.4 1237 46.8
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 2.2e-295 1019.6 1155 51.0
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 5.5e-294 1015.0 1171 47.9
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 9.8e-283 977.6 1405 41.0
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 4.3e-278 962.2 1385 40.1
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 7.3e-270 934.9 690 71.0
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 8.6e-263 911.4 966 50.0
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 9.7e-206 721.8 1190 37.8
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 1.8e-196 691.0 617 60.8
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 6.8e-183 646.0 479 71.6
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 7.5e-182 642.5 606 56.1
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 3.6e-168 597.0 736 45.8
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 3.2e-164 583.9 462 64.9
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 9.2e-156 555.8 398 71.4
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 5.6e-153 546.6 888 36.5
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 6.2e-128 463.4 694 43.2
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 4.5e-102 377.5 231 84.0
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 1.5e-76 292.7 427 43.3
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 9.8e-65 253.4 147 89.8
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.8e-63 249.2 311 49.8
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.3e-61 242.3 197 63.5
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-47 196.4 233 42.5
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 3.0e-45 188.7 147 63.3
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 5.0e-45 188.0 127 79.5
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 1.2e-43 183.3 204 52.0
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 8.9e-42 177.2 149 63.1
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 7.0e-39 167.5 123 65.9
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.1e-34 153.7 150 54.7
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 8.9e-34 150.6 208 40.9
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 8.1e-27 127.5 124 58.9
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 7.1e-23 114.4 194 41.2
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 1.2e-22 113.6 112 50.0
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 7.8e-22 110.9 112 49.1
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 7.8e-22 110.9 112 49.1
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 1.6e-19 103.2 85 62.4
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 1.6e-19 103.2 135 45.2
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 1.4e-15 90.1 69 62.3
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.4e-15 90.1 51 86.3
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.6e-11 76.6 40 90.0
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 3.6e-11 75.5 121 42.1
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 8.1e-11 74.3 120 37.5
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 1.3e-08 67.0 178 25.8
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 3.5e-06 58.9 50 58.0
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 4.6e-06 58.5 108 33.3
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 6.0e-06 58.2 402 19.7
C03p18330 Brassica napus HOM05D007170 ORTHO05D041508 7.9e-06 57.8 46 54.3


User provided reference genes

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