Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G166800 Theobroma cacao HOM05D012462 ORTHO05D013132 4.8e-64 247.7 124 100.0
Thecc.10G074500 Theobroma cacao HOM05D000003 ORTHO05D000004 8.8e-18 94.0 81 50.6
SGA_v2.0_scaffold245G44469 Striga asiatica HOM05D000003 ORTHO05D000022 1.6e-14 83.2 76 43.4
Thecc.09G240300 Theobroma cacao HOM05D000003 ORTHO05D000004 1.0e-13 80.5 86 38.4
Thecc.10G072300 Theobroma cacao HOM05D012462 ORTHO05D013132 3.2e-12 75.5 87 50.6
Thecc.10G145400 Theobroma cacao HOM05D012462 ORTHO05D013132 1.0e-10 70.5 38 94.7
Thecc.10G120700 Theobroma cacao HOM05D012462 ORTHO05D013132 5.2e-10 68.2 38 92.1
Thecc.01G204700 Theobroma cacao HOM05D012462 ORTHO05D013132 6.8e-10 67.8 102 44.1
Thecc.01G241400 Theobroma cacao HOM05D012462 ORTHO05D013132 6.8e-10 67.8 52 75.0
Thecc.06G094200 Theobroma cacao HOM05D012462 ORTHO05D013132 8.8e-10 67.4 48 70.8
Thecc.09G085900 Theobroma cacao HOM05D012462 ORTHO05D013132 8.8e-10 67.4 57 66.7
Thecc.02G229800 Theobroma cacao HOM05D012462 ORTHO05D013132 1.5e-09 66.6 79 50.6
Thecc.02G249200 Theobroma cacao HOM05D012462 ORTHO05D013132 1.5e-09 66.6 37 89.2
Thecc.02G257800 Theobroma cacao HOM05D012462 ORTHO05D013132 1.5e-09 66.6 68 61.8
Thecc.04G085300 Theobroma cacao HOM05D010356 ORTHO05D013132 1.5e-09 66.6 42 81.0
SGA_v2.0_scaffold255G45374 Striga asiatica HOM05D000003 ORTHO05D000004 2.6e-09 65.9 79 43.0
Thecc.05G113400 Theobroma cacao HOM05D012462 ORTHO05D013132 2.6e-09 65.9 74 58.1
Thecc.02G208900 Theobroma cacao HOM05D012462 ORTHO05D013132 3.4e-09 65.5 61 63.9
Thecc.03G090100 Theobroma cacao HOM05D000715 ORTHO05D000024 3.4e-09 65.5 71 54.9
Actinidia10465 Actinidia chinensis HOM05D058342 ORTHO05D013132 5.4e-07 58.2 69 36.2
Thecc.05G144900 Theobroma cacao HOM05D012462 ORTHO05D013132 7.0e-07 57.8 40 77.5
CSS0014297 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.0e-06 56.2 72 37.5
PSO384G4642 Papaver somniferum HOM05D000003 ORTHO05D000004 3.5e-06 55.5 91 36.3
QL10p023356 Quercus lobata HOM05D000003 ORTHO05D013132 3.5e-06 55.5 92 28.3
CANSAT54G2019 Cannabis sativa HOM05D000003 ORTHO05D000004 5.9e-06 54.7 86 37.2
BcaB01g06093 Brassica carinata HOM05D000003 ORTHO05D001498 7.7e-06 54.3 77 36.4


User provided reference genes

Program Settings