Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 3.5e-128 462.2 347 100.0
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 4.4e-75 285.8 304 80.6
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 2.4e-68 263.5 305 75.1
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 4.4e-67 259.2 318 69.5
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 4.4e-67 259.2 307 68.1
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 1.9e-65 253.8 307 68.4
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 4.2e-65 252.7 314 67.5
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 1.3e-61 241.1 319 62.1
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 1.9e-57 227.3 305 51.5
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 1.5e-54 217.6 304 60.5
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 4.0e-52 209.5 301 54.8
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 4.5e-51 206.1 307 53.4
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 2.2e-50 203.8 320 50.3
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 3.8e-50 203.0 301 60.8
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 1.4e-49 201.1 306 50.7
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 1.6e-48 197.6 297 54.2
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 7.9e-48 195.3 297 53.9
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 1.0e-47 194.9 310 54.2
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.3e-47 194.5 299 51.8
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 1.3e-47 194.5 299 52.5
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.8e-47 194.1 317 47.9
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 3.0e-47 193.4 325 52.6
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 3.0e-47 193.4 315 58.1
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 3.0e-47 193.4 300 54.0
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 5.1e-47 192.6 294 50.7
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 4.3e-46 189.5 296 58.1
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 5.6e-46 189.1 307 59.6
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 5.6e-46 189.1 317 56.8
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 9.6e-46 188.3 339 56.6
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 9.6e-46 188.3 316 48.7
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 2.8e-45 186.8 313 49.8
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 3.7e-45 186.4 116 77.6
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 6.2e-45 185.7 305 52.1
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 8.1e-45 185.3 114 75.4
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 1.4e-44 184.5 299 59.5
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 1.8e-44 184.1 300 58.3
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 2.4e-44 183.7 112 76.8
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 2.4e-44 183.7 339 61.1
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 4.0e-44 183.0 307 59.0
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 4.0e-44 183.0 301 56.1
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 5.3e-44 182.6 316 50.0
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 9.0e-44 181.8 309 46.3
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.5e-43 181.0 114 72.8
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 1.5e-43 181.0 113 72.6
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 5.8e-43 179.1 111 72.1
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 1.0e-42 178.3 114 71.9
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.3e-42 177.9 114 71.1
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 2.2e-42 177.2 114 71.1
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 2.2e-42 177.2 315 43.8
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 2.2e-42 177.2 114 69.3
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 4.9e-42 176.0 112 70.5
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 6.5e-42 175.6 304 53.3
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 8.4e-42 175.3 297 52.9
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 8.4e-42 175.3 309 65.0
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 1.1e-41 174.9 114 67.5
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 1.4e-41 174.5 112 68.8
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 1.9e-41 174.1 111 70.3
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 2.5e-41 173.7 114 68.4
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 2.5e-41 173.7 111 73.0
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 4.2e-41 172.9 319 53.3
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 4.2e-41 172.9 117 70.9
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 4.2e-41 172.9 365 55.3
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 5.5e-41 172.6 291 62.5
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 7.1e-41 172.2 343 58.6
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 7.1e-41 172.2 110 74.5
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 9.3e-41 171.8 113 71.7
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 1.6e-40 171.0 115 68.7
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 1.6e-40 171.0 315 56.5
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 2.7e-40 170.2 287 54.4
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 3.5e-40 169.9 110 70.0
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 4.6e-40 169.5 112 67.9
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 6.0e-40 169.1 114 70.2
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 6.0e-40 169.1 114 66.7
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 7.9e-40 168.7 309 49.5
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 7.9e-40 168.7 309 46.9
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 3.0e-39 166.8 110 67.3
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.9e-39 166.4 113 69.0
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.9e-39 166.4 113 69.0
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 3.9e-39 166.4 313 48.6
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 6.7e-39 165.6 109 70.6
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 1.1e-38 164.9 309 46.3
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 1.5e-38 164.5 118 68.6
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 1.5e-38 164.5 113 68.1
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 1.5e-38 164.5 306 48.7
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 3.3e-38 163.3 114 68.4
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 5.7e-38 162.5 306 44.4
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 7.4e-38 162.2 311 59.2
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 7.4e-38 162.2 105 70.5
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 1.3e-37 161.4 120 67.5
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 1.6e-37 161.0 106 68.9
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 2.1e-37 160.6 118 67.8
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 2.1e-37 160.6 118 67.8
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 2.1e-37 160.6 118 67.8
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 2.1e-37 160.6 118 67.8
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 2.8e-37 160.2 118 67.8
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 3.7e-37 159.8 114 67.5
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 4.8e-37 159.5 120 67.5
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 4.8e-37 159.5 331 48.9
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 6.2e-37 159.1 118 66.9
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 6.2e-37 159.1 115 66.1
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 8.2e-37 158.7 113 67.3
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 1.4e-36 157.9 118 66.1
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 1.4e-36 157.9 118 66.1
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 1.4e-36 157.9 118 66.1
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 1.4e-36 157.9 118 66.1
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 1.4e-36 157.9 118 66.1
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 1.8e-36 157.5 337 43.0
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 1.8e-36 157.5 107 71.0
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 3.1e-36 156.8 314 54.8
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.1e-36 156.8 111 69.4
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 3.1e-36 156.8 106 67.0
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 5.3e-36 156.0 107 67.3
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 6.9e-36 155.6 109 68.8
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 9.0e-36 155.2 106 67.9
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 1.2e-35 154.8 117 66.7
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 1.5e-35 154.5 117 65.0
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.5e-35 154.5 111 67.6
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 1.5e-35 154.5 113 66.4
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 2.0e-35 154.1 110 68.2
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 2.6e-35 153.7 111 67.6
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 3.4e-35 153.3 108 66.7
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 4.5e-35 152.9 111 67.6
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 7.6e-35 152.1 111 67.6
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 1.3e-34 151.4 108 66.7
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 1.7e-34 151.0 113 65.5
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 3.8e-34 149.8 111 65.8
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 8.4e-34 148.7 105 65.7
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 3.2e-33 146.7 113 69.0
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 5.5e-33 146.0 300 52.0
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 7.1e-33 145.6 107 60.7
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 7.1e-33 145.6 106 62.3
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 9.3e-33 145.2 114 68.4
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 9.3e-33 145.2 114 68.4
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 9.3e-33 145.2 114 68.4
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 1.2e-32 144.8 114 68.4
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 1.6e-32 144.4 108 61.1
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 2.7e-32 143.7 309 54.4
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 4.6e-32 142.9 117 62.4
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 7.9e-32 142.1 96 71.9
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 7.9e-32 142.1 125 58.4
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 1.3e-31 141.4 109 60.6
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 1.3e-31 141.4 105 62.9
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 1.8e-31 141.0 120 62.5
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.8e-31 141.0 320 38.8
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 5.1e-31 139.4 106 60.4
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 4.3e-30 136.3 120 59.2
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 7.4e-30 135.6 108 60.2
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 2.2e-29 134.0 120 58.3
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 2.8e-29 133.7 111 62.2
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 2.8e-29 133.7 114 60.5
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 3.7e-29 133.3 112 59.8
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 1.1e-28 131.7 110 58.2
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 2.4e-28 130.6 106 53.8
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 4.1e-28 129.8 111 57.7
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 5.3e-28 129.4 109 57.8
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 1.2e-27 128.3 109 57.8
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 1.5e-27 127.9 114 56.1
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 2.0e-27 127.5 111 61.3
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 5.9e-27 125.9 104 58.7
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 5.9e-27 125.9 110 60.0
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 5.9e-27 125.9 109 56.0
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 1.4e-25 121.3 104 60.6
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 1.4e-25 121.3 112 58.9
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 2.5e-25 120.6 102 54.9
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 5.5e-25 119.4 112 52.7
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 2.1e-24 117.5 114 55.3
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 7.9e-24 115.5 89 56.2
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 4.5e-19 99.8 109 47.7
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 7.7e-19 99.0 109 50.5
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 1.5e-14 84.7 106 43.4
Zm00001eb278420 Zea mays HOM05D003750 ORTHO05D004337 2.0e-14 84.3 120 41.7
Hma1.2p1_0073F.1_g038610 Hydrangea macrophylla HOM05D003750 ORTHO05D004337 2.8e-13 80.5 210 61.0
Zm00001eb120700 Zea mays HOM05D003750 ORTHO05D004337 4.8e-13 79.7 115 42.6
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 3.1e-12 77.0 42 66.7
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 7.0e-12 75.9 109 42.2
Os02g0230300 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.2e-11 75.1 69 55.1
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.2e-11 75.1 110 41.8
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 2.9e-10 70.5 109 38.5
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 5.0e-10 69.7 107 38.3
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 3.2e-09 67.0 114 36.0
AagrBONN_evm.TU.Sc2ySwM_228.4867 Anthoceros agrestis HOM05D003750 ORTHO05D004337 4.2e-09 66.6 108 37.0
Rhsim06G0118300 Rhododendron simsii HOM05D003750 ORTHO05D004337 2.7e-08 63.9 57 63.2
Mapoly0090s0021 Marchantia polymorpha HOM05D021038 ORTHO05D009018 1.4e-07 61.6 108 39.8


User provided reference genes

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