Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G154300 Theobroma cacao HOM05D006851 ORTHO05D008844 8.1e-108 393.7 186 100.0
Duzib187G0166 Durio zibethinus HOM05D006851 ORTHO05D008844 5.7e-21 105.1 52 88.5
Thecc.08G139600 Theobroma cacao HOM05D006851 ORTHO05D008844 9.8e-21 104.4 50 92.0
Gorai.008G099400 Gossypium raimondii HOM05D006851 ORTHO05D008844 3.1e-19 99.4 54 81.5
Gohir.D12G091800 Gossypium hirsutum HOM05D006851 ORTHO05D008844 4.1e-19 99.0 54 79.6
Gohir.A12G091300 Gossypium hirsutum HOM05D006851 ORTHO05D008844 1.2e-18 97.4 54 77.8
Haze_13231 Corylus avellana HOM05D006851 ORTHO05D008844 3.9e-17 92.4 54 74.1
Ca_18924_v3 Cicer arietinum L. HOM05D006851 ORTHO05D008844 3.3e-16 89.4 54 72.2
Dinv00450 Davidia involucrata HOM05D006851 ORTHO05D008844 5.6e-16 88.6 52 69.2
Dinv06196 Davidia involucrata HOM05D006851 ORTHO05D008844 5.6e-16 88.6 52 69.2
Cfa014654 Carpinus fangiana HOM05D006851 ORTHO05D008844 9.5e-16 87.8 54 70.4
Ca_29529_v3 Cicer arietinum L. HOM05D006851 ORTHO05D008844 9.5e-16 87.8 52 73.1
MD17G1263400 Malus domestica HOM05D006851 ORTHO05D008844 9.5e-16 87.8 52 69.2
QL08p039990 Quercus lobata HOM05D006851 ORTHO05D008844 1.2e-15 87.4 55 65.5
CiPaw.04G128500 Carya illinoinensis HOM05D006851 ORTHO05D008844 1.6e-15 87.0 54 66.7
GSVIVG01020766001 Vitis vinifera HOM05D006851 ORTHO05D008844 1.6e-15 87.0 54 70.4
Cpa.g.sc483.1 Carica papaya HOM05D006851 ORTHO05D008844 2.1e-15 86.7 55 67.3
Nn3g21095 Nelumbo nucifera HOM05D006851 ORTHO05D008844 2.1e-15 86.7 52 71.2
RcHm_v2.0_Chr2g0131101 Rosa chinensis HOM05D006851 ORTHO05D008844 2.8e-15 86.3 64 62.5
Sc21g0003000 Simmondsia chinensis HOM05D006851 ORTHO05D008844 4.7e-15 85.5 52 69.2
Oeu020925.1 Olea europaea HOM05D006851 ORTHO05D008844 6.1e-15 85.1 52 65.4
MSTRG.6776 Avicennia marina HOM05D006851 ORTHO05D008844 8.0e-15 84.7 52 67.3
COL.COLO4_33621 Corchorus olitorius HOM05D006851 ORTHO05D008844 8.0e-15 84.7 54 70.4
TPR.G9347 Trifolium pratense HOM05D006851 ORTHO05D008844 8.0e-15 84.7 54 68.5
Aqoxy4G00244 Aquilegia oxysepala HOM05D006851 ORTHO05D008844 1.0e-14 84.3 66 57.6
FvH4_6g27820 Fragaria vesca HOM05D006851 ORTHO05D008844 1.0e-14 84.3 54 66.7
FAN14G0067 Fragaria x ananassa HOM05D006851 ORTHO05D008844 1.0e-14 84.3 54 66.7
MD09G1234300 Malus domestica HOM05D006851 ORTHO05D008844 1.0e-14 84.3 52 67.3
CSS0045809 Camellia sinensis var. sinensis HOM05D006851 ORTHO05D008844 1.8e-14 83.6 52 65.4
FAN09G4077 Fragaria x ananassa HOM05D006851 ORTHO05D008844 2.3e-14 83.2 53 66.0
Lj3g0025564 Lotus japonicus HOM05D006851 ORTHO05D008844 2.3e-14 83.2 55 69.1
Migut.M00236 Erythranthe guttata HOM05D006851 ORTHO05D008844 3.1e-14 82.8 52 67.3
Sabra10G0010500 Salix brachista HOM05D006851 ORTHO05D008844 3.1e-14 82.8 54 66.7
TAR627G1017 Trochodendron aralioides HOM05D006851 ORTHO05D008844 3.1e-14 82.8 54 63.0
Lalb_Chr03g0029611 Lupinus albus HOM05D006851 ORTHO05D008844 4.0e-14 82.4 54 66.7
Manes.02G088700 Manihot esculenta HOM05D006851 ORTHO05D008844 4.0e-14 82.4 48 75.0
Phvul.011G124700 Phaseolus vulgaris HOM05D006851 ORTHO05D008844 4.0e-14 82.4 55 67.3
SGA_v2.0_scaffold9G04858 Striga asiatica HOM05D006851 ORTHO05D008844 4.0e-14 82.4 52 67.3
VMungo1127G1292 Vigna mungo HOM05D006851 ORTHO05D008844 4.0e-14 82.4 55 69.1
COL.COLO4_34178 Corchorus olitorius HOM05D006851 ORTHO05D008844 5.2e-14 82.0 50 74.0
Medtr4g078760 Medicago truncatula HOM05D006851 ORTHO05D008844 6.8e-14 81.6 54 66.7
TWI59G1351 Tripterygium wilfordii HOM05D006851 ORTHO05D008844 6.8e-14 81.6 54 63.0
Psat7g167960 Pisum sativum HOM05D006851 ORTHO05D008844 8.9e-14 81.3 54 66.7
Potri.010G032900 Populus trichocarpa HOM05D006851 ORTHO05D008844 8.9e-14 81.3 54 66.7
AUR62024041 Chenopodium quinoa HOM05D006851 ORTHO05D008844 1.2e-13 80.9 52 65.4
Hma1.2p1_0178F.1_g078440 Hydrangea macrophylla HOM05D006851 ORTHO05D008844 1.2e-13 80.9 57 59.6
CARHR137850 Cardamine hirsuta HOM05D006851 ORTHO05D008844 2.0e-13 80.1 48 72.9
PSO170G1219 Papaver somniferum HOM05D006851 ORTHO05D008844 2.0e-13 80.1 54 59.3
PSO782G5210 Papaver somniferum HOM05D006851 ORTHO05D008844 2.0e-13 80.1 54 59.3
Atru.chr6.2752 Acer truncatum HOM05D006851 ORTHO05D008844 2.6e-13 79.7 52 63.5
Thhalv10017191m.g Eutrema salsugineum HOM05D006851 ORTHO05D008844 2.6e-13 79.7 48 70.8
Glyma.06G289700 Glycine max HOM05D006851 ORTHO05D008844 2.6e-13 79.7 55 65.5
Ciclev10016542m.g Citrus clementina HOM05D006851 ORTHO05D008844 3.4e-13 79.3 52 63.5
PGR142G1684 Punica granatum HOM05D006851 ORTHO05D008844 3.4e-13 79.3 47 70.2
Eucgr.K01171 Eucalyptus grandis HOM05D006851 ORTHO05D008844 5.8e-13 78.6 55 60.0
Prupe.3G112500 Prunus persica HOM05D006851 ORTHO05D008844 7.5e-13 78.2 52 65.4
Actinidia24403 Actinidia chinensis HOM05D006851 ORTHO05D008844 9.8e-13 77.8 52 61.5
AL4G41380 Arabidopsis lyrata HOM05D006851 ORTHO05D008844 9.8e-13 77.8 48 68.8
AT2G42770 Arabidopsis thaliana HOM05D006851 ORTHO05D008844 9.8e-13 77.8 48 68.8
Carub.0004s2521 Capsella rubella HOM05D006851 ORTHO05D008844 9.8e-13 77.8 48 68.8
Hma1.2p1_0178F.1_g078450 Hydrangea macrophylla HOM05D006851 ORTHO05D008844 1.3e-12 77.4 53 62.3
Sp4g24890 Schrenkiella parvula HOM05D006851 ORTHO05D008844 1.3e-12 77.4 47 68.1
EL10Ac9g20993 Beta vulgaris HOM05D006851 ORTHO05D008844 1.7e-12 77.0 52 61.5
ClCG09G020830 Citrullus lanatus HOM05D006851 ORTHO05D008844 1.7e-12 77.0 54 63.0
unitig_62.g23129 Utricularia gibba HOM05D006851 ORTHO05D008844 2.2e-12 76.6 51 60.8
arahy.Tifrunner.gnm1.ann1.WV2S1U Arachis hypogaea HOM05D006851 ORTHO05D008844 2.9e-12 76.3 48 66.7
CAN.G1360.8 Capsicum annuum HOM05D006851 ORTHO05D008844 2.9e-12 76.3 60 46.7
Nitab4.5_0000249g0050 Nicotiana tabacum HOM05D006851 ORTHO05D008844 2.9e-12 76.3 52 53.8
Peaxi162Scf00469g00629 Petunia axillaris HOM05D006851 ORTHO05D008844 2.9e-12 76.3 52 53.8
CsaV3_6G037870 Cucumis sativus L. HOM05D006851 ORTHO05D008844 4.9e-12 75.5 54 61.1
PGSC0003DMG400017313 Solanum tuberosum HOM05D006851 ORTHO05D008844 4.9e-12 75.5 52 53.8
SalBow7G2485 Salvia bowleyana HOM05D006851 ORTHO05D008844 6.4e-12 75.1 51 58.8
Solyc07g055340.3 Solanum lycopersicum HOM05D006851 ORTHO05D008844 6.4e-12 75.1 52 53.8
Sopen07g026880 Solanum pennellii HOM05D006851 ORTHO05D008844 6.4e-12 75.1 52 53.8
THA.LOC104803044 Tarenaya hassleriana HOM05D006851 ORTHO05D008844 6.4e-12 75.1 48 66.7
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 6.4e-12 75.1 54 57.4
Sed0012320 Sechium edule HOM05D006851 ORTHO05D008844 8.3e-12 74.7 55 56.4
CANSAT64G1521 Cannabis sativa HOM05D006851 ORTHO05D008844 1.1e-11 74.3 54 57.4
ECA233G5608 Erigeron canadensis HOM05D006851 ORTHO05D008844 1.1e-11 74.3 43 67.4
Thecc.01G154700 Theobroma cacao HOM05D006851 ORTHO05D008844 1.1e-11 74.3 35 91.4
Nitab4.5_0005922g0060 Nicotiana tabacum HOM05D006851 ORTHO05D008844 1.9e-11 73.6 52 51.9
Aa31LG1G24530 Aethionema arabicum HOM05D006851 ORTHO05D008844 2.4e-11 73.2 48 64.6
BcaC02g07219 Brassica carinata HOM05D000115 ORTHO05D005317 2.4e-11 73.2 48 62.5
A04p32390 Brassica napus HOM05D006851 ORTHO05D008844 2.4e-11 73.2 48 62.5
C04p69910 Brassica napus HOM05D006851 ORTHO05D008844 2.4e-11 73.2 48 62.5
BolC4t28490H Brassica oleracea HOM05D006851 ORTHO05D008844 2.4e-11 73.2 48 62.5
BraA04t18692Z Brassica rapa HOM05D006851 ORTHO05D008844 2.4e-11 73.2 48 62.5
MELO3C014448.2 Cucumis melo HOM05D006851 ORTHO05D008844 2.4e-11 73.2 54 59.3
HanXRQChr14g0455141 Helianthus annuus HOM05D006851 ORTHO05D008844 4.1e-11 72.4 54 57.4
Lj1A675G56 Lonicera japonica HOM05D006851 ORTHO05D008844 4.1e-11 72.4 50 56.0
Cc05_g08670 Coffea canephora HOM05D006851 ORTHO05D008844 5.4e-11 72.0 51 54.9
Lsat_1_v5_gn_4_64780 Lactuca sativa HOM05D006851 ORTHO05D008844 5.4e-11 72.0 43 67.4
ATR0012G031 Amborella trichopoda HOM05D006851 ORTHO05D008844 9.2e-11 71.2 46 65.2
HPP92_011489 Vanilla planifolia HOM05D006851 ORTHO05D008844 2.0e-10 70.1 42 69.0
Zm00001eb361970 Zea mays HOM05D006851 ORTHO05D008844 1.3e-09 67.4 54 51.9
SEGI_02260 Sequoiadendron giganteum HOM05D006851 ORTHO05D008844 1.7e-09 67.0 84 40.5
Os01g0730800 Oryza sativa ssp. japonica HOM05D006851 ORTHO05D008844 2.3e-09 66.6 54 51.9
SMO351G0432 Selaginella moellendorffii HOM05D006851 ORTHO05D008844 2.3e-09 66.6 54 53.7
Glyma.12G117300 Glycine max HOM05D006851 ORTHO05D008844 1.5e-08 63.9 35 77.1
SEGI_39598 Sequoiadendron giganteum HOM05D006851 ORTHO05D008844 5.6e-08 62.0 51 52.9
FAN02G4364 Fragaria x ananassa HOM05D006851 ORTHO05D008844 2.1e-07 60.1 35 71.4
AagrBONN_evm.TU.Sc2ySwM_228.5720 Anthoceros agrestis HOM05D006851 ORTHO05D008844 2.8e-07 59.7 43 60.5
Pp3c20_12770 Physcomitrium patens HOM05D006851 ORTHO05D008844 1.4e-06 57.4 43 55.8
CBR_g30010 Chara braunii HOM05D006851 ORTHO05D008844 1.8e-06 57.0 36 63.9


User provided reference genes

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