Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 5.7e-69 265.0 244 100.0
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.4e-45 186.0 246 81.7
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 4.4e-45 185.7 246 80.5
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 2.7e-42 176.4 246 78.5
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 1.7e-33 147.1 243 69.5
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 1.3e-25 120.9 161 63.4
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 3.9e-25 119.4 271 57.6
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 6.6e-25 118.6 161 72.7
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 7.3e-24 115.2 193 56.5
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.6e-23 114.0 272 54.0
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 4.7e-23 112.5 281 57.7
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 6.2e-23 112.1 161 75.8
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 6.8e-22 108.6 271 53.5
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 7.5e-21 105.1 131 61.8
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 9.8e-21 104.8 162 63.6
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 9.8e-21 104.8 254 54.3
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 2.9e-20 103.2 189 45.0
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 4.9e-20 102.4 133 69.9
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 3.2e-19 99.8 125 68.0
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.0e-17 94.7 161 62.7
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.7e-17 94.0 154 69.5
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 3.0e-17 93.2 184 57.1
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 3.9e-17 92.8 195 57.9
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 3.9e-17 92.8 192 58.3
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 1.5e-16 90.9 92 60.9
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 1.5e-16 90.9 230 54.3
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 3.3e-16 89.7 280 51.4
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 9.5e-16 88.2 65 76.9
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 9.5e-16 88.2 183 56.3
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.8e-15 86.7 125 68.8
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.1e-14 84.7 158 55.7
Nitab4.5_0013117g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.4e-14 84.3 162 62.3
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 3.1e-14 83.2 97 70.1
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 4.0e-14 82.8 126 50.0
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 4.0e-14 82.8 65 70.8
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 5.2e-14 82.4 180 57.8
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 6.8e-14 82.0 301 51.8
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 6.8e-14 82.0 89 57.3
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 1.2e-13 81.3 125 58.4
CDE06G0340 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 4.4e-13 79.3 113 65.5
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 5.8e-13 79.0 161 52.8
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 5.8e-13 79.0 161 52.8
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 7.5e-13 78.6 195 50.8
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 9.9e-13 78.2 194 55.2
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.3e-12 77.8 59 74.6
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.3e-12 77.8 59 74.6
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 1.7e-12 77.4 280 50.0
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 1.7e-12 77.4 158 54.4
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 2.2e-12 77.0 167 49.7
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.2e-12 77.0 275 49.8
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 2.9e-12 76.6 164 61.0
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 3.7e-12 76.3 160 65.6
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 3.7e-12 76.3 131 61.1
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 6.4e-12 75.5 176 42.6
Aa31LG11G7390 Aethionema arabicum HOM05D012923 ORTHO05D014747 1.1e-11 74.7 127 64.6
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.1e-11 74.7 127 44.9
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.1e-11 74.7 279 46.2
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 2.4e-11 73.6 281 44.5
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 3.2e-11 73.2 130 58.5
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.1e-11 72.8 195 55.4
AUR62000566 Chenopodium quinoa HOM05D003347 ORTHO05D003821 5.4e-11 72.4 112 67.9
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 5.4e-11 72.4 130 52.3
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 5.4e-11 72.4 191 50.8
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 5.4e-11 72.4 157 54.8
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 9.2e-11 71.6 197 53.8
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-10 71.2 280 50.0
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.2e-10 71.2 264 55.3
Nitab4.5_0000816g0010 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.6e-10 70.9 161 50.3
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 2.1e-10 70.5 131 59.5
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.1e-10 70.5 193 51.8
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 3.5e-10 69.7 194 55.7
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 3.5e-10 69.7 145 54.5
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 3.5e-10 69.7 280 49.6
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 4.6e-10 69.3 125 62.4
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 6.0e-10 68.9 148 53.4
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 6.0e-10 68.9 192 46.4
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 6.0e-10 68.9 159 50.9
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 6.0e-10 68.9 276 47.1
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 6.0e-10 68.9 158 55.7
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 7.8e-10 68.6 131 58.0
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 7.8e-10 68.6 133 57.1
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.0e-09 68.2 280 49.3
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 1.0e-09 68.2 107 47.7
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 1.3e-09 67.8 163 51.5
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 1.7e-09 67.4 274 46.7
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 2.3e-09 67.0 158 42.4
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 2.3e-09 67.0 154 52.6
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 3.0e-09 66.6 131 58.0
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 3.0e-09 66.6 193 50.3
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 5.1e-09 65.9 131 58.8
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 1.5e-08 64.3 192 45.3
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 1.5e-08 64.3 156 51.3
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 1.5e-08 64.3 154 50.6
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 1.9e-08 63.9 193 54.4
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 1.9e-08 63.9 194 46.4
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 2.5e-08 63.5 87 47.1
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 2.5e-08 63.5 157 61.1
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.5e-08 63.5 131 54.2
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 2.5e-08 63.5 280 48.2
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 3.3e-08 63.2 125 57.6
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 3.3e-08 63.2 195 50.3
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 5.6e-08 62.4 280 50.7
ECA248G0339 Erigeron canadensis HOM05D003347 ORTHO05D003821 5.6e-08 62.4 63 58.7
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 5.6e-08 62.4 159 56.6
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 5.6e-08 62.4 113 66.4
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 5.6e-08 62.4 131 55.0
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 7.3e-08 62.0 133 36.1
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 9.5e-08 61.6 158 50.0
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 1.2e-07 61.2 170 48.8
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 1.2e-07 61.2 170 48.8
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 1.6e-07 60.8 193 42.5
Pp3c9_6610 Physcomitrium patens HOM05D003347 ORTHO05D003821 1.6e-07 60.8 130 55.4
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 2.1e-07 60.5 165 55.2
Aa31LG1G3970 Aethionema arabicum HOM05D003347 ORTHO05D003821 2.8e-07 60.1 130 49.2
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 2.8e-07 60.1 197 43.1
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 2.8e-07 60.1 164 34.1
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 3.6e-07 59.7 276 56.9
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 6.2e-07 58.9 160 48.8
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 8.1e-07 58.5 277 52.0
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 8.1e-07 58.5 171 50.3
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 1.1e-06 58.2 195 46.7
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 1.4e-06 57.8 273 48.7
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.4e-06 57.8 280 46.8
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 1.8e-06 57.4 276 53.3
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 1.8e-06 57.4 156 50.0
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 3.1e-06 56.6 163 53.4
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 3.1e-06 56.6 163 53.4
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 3.1e-06 56.6 157 58.0
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 3.1e-06 56.6 160 53.1
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 3.1e-06 56.6 252 46.4
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 4.0e-06 56.2 191 48.7
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 4.0e-06 56.2 164 39.0
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 5.2e-06 55.8 44 65.9
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 5.2e-06 55.8 194 45.4
Ca_17010_v3 Cicer arietinum L. HOM05D003347 ORTHO05D003821 6.8e-06 55.5 91 71.4
SHI11423 Sapria himalayana HOM05D003347 ORTHO05D003821 6.8e-06 55.5 83 62.7


User provided reference genes

Program Settings